Locus 1837

Sequence ID 3L_DroMel_CAF1
Location 5,150,422 – 5,150,515
Length 93
Max. P 0.579815
window2867

overview

Window 7

Location 5,150,422 – 5,150,515
Length 93
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.61
Mean single sequence MFE -17.04
Consensus MFE -11.07
Energy contribution -11.35
Covariance contribution 0.28
Combinations/Pair 1.18
Mean z-score -1.47
Structure conservation index 0.65
SVM decision value 0.09
SVM RNA-class probability 0.579815
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5150422 93 - 23771897
CCCUCUAAAUGCCAAGAUGCAUUGUCCGUUUU-CUCC------------CCAGCUUCUUGCAUUGGGCUGUC-CACUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
(((....(((((.((((.((............-....------------...)).)))))))))))).....-......(((((((((.......)))))))))... ( -17.11)
>DroPse_CAF1 52138 102 - 1
CCUCCUCAAAGUGGAGGUCCCUU--AGGUCUC-UUCCACUGCUACACUUCCUUUAUCUUCCACUC--CUCUCUAUCUAAAUUGAGUUCUGUUCUUUAAUUCAAUAAA
.........((((((((.((...--.))...)-))))))).........................--............((((((((.........))))))))... ( -16.20)
>DroSec_CAF1 13620 93 - 1
CCCCCUAAAUGCCAAGAUGCAUUGUACGUUUU-CUCC------------CCAGCUUCUUGGACUGGCCUGUC-CACUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
.......(((((......))))).........-....------------.........(((((......)))-))....(((((((((.......)))))))))... ( -16.60)
>DroSim_CAF1 12803 93 - 1
CCCCCUAAAUGCCAAGAUGCAUUGUCCGUUUU-CUCC------------CCAGCUUCUUGGACUGGCCUGUC-CACUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
.......(((((......))))).........-....------------.........(((((......)))-))....(((((((((.......)))))))))... ( -16.60)
>DroEre_CAF1 13848 93 - 1
UUCUCUAAAUGCCAAGAUGCAUUGUCCGUUUU-CUGC------------CCAGCUUCUUGGACUGGCCCGUC-CGCUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
...........((((((.((..((..((....-.)).------------.)))).))))))..((((.....-.)).))(((((((((.......)))))))))... ( -16.60)
>DroYak_CAF1 13734 94 - 1
UUCUCUAAAUGCCAAGAUGCAUUGUCCGUUUUGCUCC------------CCAGCUUCUUGGACUGGCCUGUC-CACUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
.......(((((......)))))(((((....(((..------------..)))....)))))(((.....)-))....(((((((((.......)))))))))... ( -19.10)
>consensus
CCCCCUAAAUGCCAAGAUGCAUUGUCCGUUUU_CUCC____________CCAGCUUCUUGGACUGGCCUGUC_CACUCAAUUGAGUUAUCUGCUUUAAUUCAAUAAA
...........((((((.((................................)).))))))..................(((((((((.......)))))))))... (-11.07 = -11.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:59 2006