Locus 1836

Sequence ID 3L_DroMel_CAF1
Location 5,149,164 – 5,149,276
Length 112
Max. P 0.962912
window2866

overview

Window 6

Location 5,149,164 – 5,149,276
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 69.78
Mean single sequence MFE -20.72
Consensus MFE -1.88
Energy contribution -2.84
Covariance contribution 0.96
Combinations/Pair 1.14
Mean z-score -2.57
Structure conservation index 0.09
SVM decision value 1.55
SVM RNA-class probability 0.962912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5149164 112 - 23771897
AAAACAAAGUGAAAACAAUGCAAAUUUGUGUCAGCCAAUAAACU----CGCAGUGUUGGCAAAACGAAUUGAACGAAAAAAC-CUAGGAAAACCAGAAAGGAAAACAGCCACUUU-UC--
.....((((((...........(((((((....(((((((....----.....)))))))...)))))))...........(-((.((....))....)))........))))))-..-- ( -18.70)
>DroPse_CAF1 50756 100 - 1
AAAACAAA----ACACAUUGCAA----------GGCAAUGAACAUUCACGA-AUGU--GCAAA--GAAAUGCAC-AAAAAUCGCCAUGAAAAUGUGCGCAAAAGCCAGUCUCUGGUUAAA
........----...((((((..----------.))))))...........-.(((--(((..--....)))))-).....((((((....))).)))....((((((...))))))... ( -24.60)
>DroSec_CAF1 12367 112 - 1
AAAACAAAGUGAAAACAAUGCAAAUUUGUGUCAGCCAAUAAACU----CGCAAUGUUGGCAAAACGAAUUGAAC-AAAAAUC-CGAGGAAAACCAGAAAGGAAAACAGCCACUUGUCC--
......(((((.......((..(((((((....(((((((....----.....)))))))...)))))))...)-)....((-(..((....)).....))).......)))))....-- ( -19.40)
>DroYak_CAF1 12504 112 - 1
GAAACAAAGUGAAAACAAUGCAAAUUUGUGUCAGCCAAUAAACU----CGCAAUGUUGGCAAAACGAAUUGAAC-AAAAAAC-CGAGAAAAACCAGAAAGGAAAAUGGCCACUUGAUC--
......(((((.......((..(((((((....(((((((....----.....)))))))...)))))))...)-)......-.........(((..........))).)))))....-- ( -17.80)
>DroPer_CAF1 48454 101 - 1
AAAACAAA----ACACAUUGCAA----------GGCAAUGAACAUUCACGAAAUGU--GCAAA--GAAAUGCAC-UAAAAUCGCCAUGAAAAUGUGCGCAAAAGCCAGUCUCUGGUUAAA
........----...((((((..----------.))))))..............((--(((..--....)))))-......((((((....))).)))....((((((...))))))... ( -23.10)
>consensus
AAAACAAAGUGAAAACAAUGCAAAUUUGUGUCAGCCAAUAAACU____CGCAAUGUUGGCAAAACGAAUUGAAC_AAAAAUC_CCAGGAAAACCAGAAAGGAAAACAGCCACUUGUUC__
.................................(((((((.............)))))))............................................................ ( -1.88 =  -2.84 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:58 2006