Locus 1835

Sequence ID 3L_DroMel_CAF1
Location 5,146,688 – 5,146,791
Length 103
Max. P 0.996242
window2865

overview

Window 5

Location 5,146,688 – 5,146,791
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 93.45
Mean single sequence MFE -26.80
Consensus MFE -22.90
Energy contribution -22.66
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -2.30
Structure conservation index 0.85
SVM decision value 2.67
SVM RNA-class probability 0.996242
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5146688 103 - 23771897
ACAGUUGGCCAAAGUCUGGGGAGACACGUGUGGGCCACAAAAAUCAUGUGGAAAGCAUGAGAAACAUGUAGAAAAUAAUAGCUAGCGAAACAGGCAGCAAAAC
...((((((....((((....)))).(((((...(((((.......)))))...))))).....................))))))................. ( -24.20)
>DroSec_CAF1 10036 102 - 1
ACAGUUGGCCAAAGUCUGG-GAGACACGUGUGGGCCACGAAACUCAUGUGGAAAGCAUGAGAAACAUGUAGAAAAUAAUAGCUAGCGAAUGAGUCGGCAAAGC
((((((((((........(-....).......))))......(((((((.....))))))).))).)))...........((..((......))..))..... ( -26.86)
>DroSim_CAF1 8926 102 - 1
ACAGUUGGCCAAAGUCUGG-GAGACACGUGUGGGCCACAAAACUCAUGUGGAAAGCAUGAGAAACAUGUAGAAAAUAAUAGCUAGCGAAAGAGUCGGCAAAGC
((((((((((........(-....).......))))......(((((((.....))))))).))).)))...........((..((......))..))..... ( -26.86)
>DroEre_CAF1 10184 101 - 1
ACAGUUGACCAAAGUCUGG-GAGACACGUGUGGGCCACAAAAAUCGUGUGGAAAGCAUGAGAAACAUGUAGA-AAUAAUAGCUGGCGAAAGAGCCGGCAAAAC
((((((..(((.....)))-..))).(((((...(((((.......)))))...))))).......)))...-.......((((((......))))))..... ( -32.00)
>DroYak_CAF1 10020 101 - 1
ACAGUUGGCCAAAGUCUGG-GAGACACGUGUGGGCCACAAAAACCGUGUGGAAAGCAUGAGAAACAUGUAGA-ACUAAUAGCUAGCGAAAGAGUCGGCAAAAC
...((((((...(((((((-....).(((((...(((((.......)))))...))))).........))).-)))....))))))................. ( -24.10)
>consensus
ACAGUUGGCCAAAGUCUGG_GAGACACGUGUGGGCCACAAAAAUCAUGUGGAAAGCAUGAGAAACAUGUAGAAAAUAAUAGCUAGCGAAAGAGUCGGCAAAAC
((((((.......((((....)))).(((((...(((((.......)))))...)))))...))).)))...........(((.((......)).)))..... (-22.90 = -22.66 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:57 2006