Locus 1834

Sequence ID 3L_DroMel_CAF1
Location 5,144,582 – 5,144,702
Length 120
Max. P 0.738833
window2864

overview

Window 4

Location 5,144,582 – 5,144,702
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.01
Mean single sequence MFE -32.03
Consensus MFE -21.96
Energy contribution -22.92
Covariance contribution 0.96
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.69
SVM decision value 0.44
SVM RNA-class probability 0.738833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5144582 120 - 23771897
UGCUCUAUACAUUUUAAUAUUGCCUACAGCUGUGGGCUGCUCGAAUGUAUGGAGUGCUUUGACCAUCUAACGUUUGUGUUUCCGCACAAGUAGUAUUCAUUUAAAAUGGUGAUGGUAAUG
.(((((((((((((.......((((((....)))))).....)))))))))))))......((((((.....(((((((....)))))))......((((.....)))).)))))).... ( -38.20)
>DroSec_CAF1 7924 116 - 1
UGCUCUAUACAUUUUAAUAUUGCCUACAGCUGUGGGCUGCUCGAAUGUAUGGAGUGCUUUGACCAUCUAUUGUGCGUGUUUCCGCACAAG---UAUCCAUUUAAAAUGGUACU-GUAAUG
.(((((((((((((.......((((((....)))))).....)))))))))))))...............((((((......))))))((---((.((((.....))))))))-...... ( -39.00)
>DroSim_CAF1 6846 116 - 1
UGCUCUAUACAUUUUAAUAUUGCCUACAGCUGUGGGCUGCUCGAAUGUAUGGAGUGCUUUGACCAUCUAUCGUUCGUGUUUCCGCACAAG---UAUCCAUUUAAAAUGGUGCU-GUAAUG
.(((((((((((((.......((((((....)))))).....)))))))))))))....................((((....)))).((---((.((((.....))))))))-...... ( -34.00)
>DroEre_CAF1 8073 113 - 1
UGCUCUAUACAUUUUAAUAUUGCCUACAGCCGUGGGCUGCUGAAAU--AUGGACUGCUUUGACCUUCUAUCGUUUGUGUUUCC-CACAAG---UAUACAUUUAAAAUCGUGUU-AUAACG
......(((((((((((....((((((....))))))(((((((((--(..(((.................)))..)))))).-....))---)).....))))))).)))).-...... ( -21.73)
>DroYak_CAF1 8029 111 - 1
UGCUCUAUACAUUUUAAUAUUGCCUACAGCUGCGGGCUGGUGAAAUGUAUGGACUGCUUUGACUAUCUAUC-----UGUUUCCGCACAAG---UGUCCAUUUUAAAUGGUGCU-AUAAUG
...(((((((((((((.....(((..(....)..)))...))))))))))))).(((...(((........-----.)))...)))..((---((.((((.....))))))))-...... ( -27.20)
>consensus
UGCUCUAUACAUUUUAAUAUUGCCUACAGCUGUGGGCUGCUCGAAUGUAUGGAGUGCUUUGACCAUCUAUCGUUCGUGUUUCCGCACAAG___UAUCCAUUUAAAAUGGUGCU_GUAAUG
.(((((((((((((.......((((((....)))))).....)))))))))))))....................(((......)))................................. (-21.96 = -22.92 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:56 2006