Locus 1833

Sequence ID 3L_DroMel_CAF1
Location 5,143,480 – 5,143,573
Length 93
Max. P 0.939465
window2863

overview

Window 3

Location 5,143,480 – 5,143,573
Length 93
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 88.60
Mean single sequence MFE -16.40
Consensus MFE -15.28
Energy contribution -14.96
Covariance contribution -0.31
Combinations/Pair 1.12
Mean z-score -1.85
Structure conservation index 0.93
SVM decision value 1.28
SVM RNA-class probability 0.939465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5143480 93 - 23771897
UUUUCGAUCCUGA----AUACAUUUGUAAAAUUGAAAUAUAUUCGCUCCUUUCUUUCGUUGUCUGAGCAGUAUCUUUCGGAUACGUUUGUAUCUUUG
.............----(((((..((((...((((((.(((((.((((....(.......)...))))))))).)))))).))))..)))))..... ( -15.90)
>DroSec_CAF1 6869 93 - 1
UUUUCGAUCCUGA----AUACAUUUGUAAAAUUGAAAUAUAUUCGCUCCUUUCUUUCGUCUUGUGAGCAGUAUCUUUCAGAUACGUUUGUAUCUUCG
....(((....((----.((((..((((...((((((.(((((.(((((.............).))))))))).)))))).))))..)))))).))) ( -18.32)
>DroSim_CAF1 5796 87 - 1
UUUUCGAUCCUGA----AUACAUUUGUAAAAUUGAAAUAUAUUCGCUCCUUUCUUUC------UGAGUAGUAUCUUUCAGAUACGUUUGUAUCUUCG
....(((....((----.((((..((((...((((((.(((((.((((.........------.))))))))).)))))).))))..)))))).))) ( -15.90)
>DroYak_CAF1 6913 97 - 1
UUUUCGAUACUAAAUAAAUACAUUUGUAAAAUUGAAAUAUAUUCGCUCCCUUAUUUCCUUUUCUGAGCCGUAUCUUUCAGAUACAUUUGUAUCUUCG
.................(((((..((((...((((((.((((..((((................)))).)))).)))))).))))..)))))..... ( -15.49)
>consensus
UUUUCGAUCCUGA____AUACAUUUGUAAAAUUGAAAUAUAUUCGCUCCUUUCUUUCGUUUUCUGAGCAGUAUCUUUCAGAUACGUUUGUAUCUUCG
.................(((((..((((...((((((.(((((.((((................))))))))).)))))).))))..)))))..... (-15.28 = -14.96 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:55 2006