Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,137,496 – 5,137,616 |
Length | 120 |
Max. P | 0.573423 |
Location | 5,137,496 – 5,137,616 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -34.08 |
Consensus MFE | -27.08 |
Energy contribution | -26.95 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.24 |
Mean z-score | -2.28 |
Structure conservation index | 0.79 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5137496 120 - 23771897 GUGCGAGCAAAUCAUUCAGAUGUUCAAUGGUAACACAAUACCGGGUGCCAAAGAUCCCCUGCUGGUUAAGUUUGCCGAUGGCGGACCGAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC ....(((((..((.....)))))))...((((......))))(((((.(...(.(((((...((((.......))))..)).))).)......((((.....))))..).)))))..... ( -29.80) >DroVir_CAF1 1809 120 - 1 AUGCGAACAAAUUAUACAAAUGUUCAACGGUAACACAAUACCGGGUGCCAAAGAUCCGCUAUUGGUGAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC ....(((((...........)))))...((((......))))(((((.(...((.((((((((((((.....)))))))))))))).......((((.....))))..).)))))..... ( -41.70) >DroGri_CAF1 1176 120 - 1 GUGCGAACAAAUUAUACAAAUGUUUAACGGUAACACAAUACCGGGUGCCAAAGAUCCGCUAUUGGUCAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC ((..(((((...........))))).))((((......))))(((((.(...((.(((((((((((.......))))))))))))).......((((.....))))..).)))))..... ( -36.70) >DroWil_CAF1 2607 120 - 1 AUGCGAACAAAUCAUUCAGAUGUUCAAUGGUAACACAAUACCGGGUGCCAAAGAUCCAUUAUUGGUGAAAUUCGCCGAUGGUGGACCAAAAAAGAAGAAUCUCUUCAAGACUCCCGAUCC ....(((((..((.....)))))))...((((......))))(((.(.(...(.(((((((((((((.....))))))))))))).)......((((.....))))..).).)))..... ( -36.10) >DroMoj_CAF1 458 120 - 1 GUGCGAACAAAUUAUACAGAUGUUUAACGGUAACACAAUAACGGGUGCCAAAGAUCCCCUAUUGGUGAAAUUCGCCGAUGGCGGUCCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC (((...((...(((.((....)).)))..))..))).....((((((.(...((.((.(((((((((.....))))))))).)))).......((((.....))))..).)))))).... ( -32.80) >DroAna_CAF1 1174 120 - 1 GUGCGAGCAAAUCAUCCAGAUGUUUAAUGGCAACACAAUACCGGGUGGCAAAGAUCCCCUCCUUGUGAAAUUCGCCGACGGUGGACCCAAAAAGAAGAAUCUCUUCAAGACACCCGAUCC .(((.(..(((.(((....))))))..).))).........((((((.......(((((((...(((.....))).)).)).)))........((((.....))))....)))))).... ( -27.40) >consensus GUGCGAACAAAUCAUACAGAUGUUCAACGGUAACACAAUACCGGGUGCCAAAGAUCCCCUAUUGGUGAAAUUCGCCGAUGGCGGACCCAAAAAGAAGAAUCUCUUCAAGACGCCCGAUCC ....(((((..((.....)))))))................((((((.(......((.(((((((((.....))))))))).)).........((((.....))))..).)))))).... (-27.08 = -26.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:52 2006