Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,137,241 – 5,137,336 |
Length | 95 |
Max. P | 0.721678 |
Location | 5,137,241 – 5,137,336 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 80.42 |
Mean single sequence MFE | -30.13 |
Consensus MFE | -17.73 |
Energy contribution | -19.04 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.59 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5137241 95 - 23771897 UCCCAAUGGAUUCCGGGUUACAUGAUGA------------CUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAU-----ACAUCCAUUAUGGGUGUAUUUGACACUGGACUGAA (((....)))..((((((((.....)))------------))).)).......((((.(.(((.((.((.((-----((((((.....)))))))))).))))).).)))). ( -25.40) >DroSec_CAF1 827 96 - 1 UCCCAGUGGAUACCGGGUUACAUGAUGAC---------AACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUUU-----ACUUCCAUUAUGU--GUAUUUGACACUGGACUGAA ..((((((..(((((((((..........---------))))).)))).....(((((((.((((((((...-----...))))))))..--.)))))))))))))...... ( -31.50) >DroSim_CAF1 332 96 - 1 UCCCAGUGGAUACCGGGUUACAUGAUGAC---------AACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUUU-----ACUUCCAUUAUGG--GUAUUUGACACUGGACUGAA ..((((((..(((((((((..........---------))))).)))).....(((((((.((((((((...-----...))))))))..--.)))))))))))))...... ( -31.50) >DroEre_CAF1 821 105 - 1 UCCCAGUGGAUACCCGGUUACAUGAUGACCCAACCGAUCACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAG-----ACUUCCAUUAUGG--GUAUAUGACACUGGGCUGAA .(((((((.(((((((((((.....)))))..((((((((.((.....))))))).)))..((((((((...-----...))))))))))--))))....)))))))..... ( -42.00) >DroYak_CAF1 837 105 - 1 UCACAGUGGAUACCCGGUUACAUGAUGACCCAACCGAUCACUCAGGUAGAUGAUCAGGUGAGUAGUGGAGAU-----ACUUCCAUUAUGU--GUAUAUGACACUGGACUGAA ((.(((((.((((.((((((.....)))))..((((((((.((.....))))))).)))..(((((((((..-----..)))))))))).--))))....)))))))..... ( -29.50) >DroAna_CAF1 905 109 - 1 UCCCAAUGGAUACCCGGCUAUAUGAUGACCCAGCCGAUCACUCAGGUAGAUGAUCAGGUAAGUGCUGAGUAAUAGCCAAAAACAUAAUG---GUACUGGACUUUAGAUAGAA ..(((..((....))((((((((...(..(..((((((((.((.....))))))).)))..)..)...)).))))))............---....)))............. ( -20.90) >consensus UCCCAGUGGAUACCCGGUUACAUGAUGAC_________CACUCAGGUAGAUGAUCAGGUGAGUAGUGGAUAU_____ACUUCCAUUAUGG__GUAUUUGACACUGGACUGAA ..((((((..((((.(((((..((.(((.............)))..))..))))).)))).((((((((...........))))))))............))))))...... (-17.73 = -19.04 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:51 2006