Locus 183

Sequence ID 3L_DroMel_CAF1
Location 535,406 – 535,518
Length 112
Max. P 0.665779
window264

overview

Window 4

Location 535,406 – 535,518
Length 112
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 93.01
Mean single sequence MFE -17.96
Consensus MFE -15.32
Energy contribution -15.72
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.85
SVM decision value 0.28
SVM RNA-class probability 0.665779
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 535406 112 - 23771897
UAUUAGCCAAUAUACAGGCCACGUAUGACAACACCAGA------AGUCAAAUUUGGUGGCAUGUCAGAAAUAAUUGAGGGAAAAGCUAAGCAAAAUAAAUACACAUCAUUAAGAUAAU
.....(((........)))...((((((((.(((((((------.......)))))))...))))........(((..((.....))...))).....))))................ ( -18.80)
>DroSec_CAF1 9500 112 - 1
UAUUAGCCAAUAUACAGACCACGUAUGACAACACCAGA------AGUCAAAUUUGGUGGCAUGUCAGAAAUAAUUGAGGGAAAAGCUAAGCAAAAUAAAUACACAUCAUAAAGAUAAU
..(((((....((((.......))))((((.(((((((------.......)))))))...))))...................)))))............................. ( -17.40)
>DroSim_CAF1 10365 112 - 1
UAUUAGCCAAUAUACAGACCACGUAUGACAACACCAGA------AGUCAAAUUUGGUGGCAUGUCAGAAAUAAUUGAGGGAAAAGCUAAGCAAAAUAAAUACACAUCAUAAAGAUAAU
..(((((....((((.......))))((((.(((((((------.......)))))))...))))...................)))))............................. ( -17.40)
>DroEre_CAF1 9799 112 - 1
CUAUAGCAAAUAUACAGACCACGUAUGACAACACCAGA------AGUCAAAUUUGGUGGCAUGUCAGAAAUAAUUGAGGGAAAAGCUAAGCAAAAUAAAUACACAACAUAAAGAUAAU
...((((....((((.......))))((((.(((((((------.......)))))))...))))...................)))).............................. ( -17.40)
>DroYak_CAF1 9960 118 - 1
UAUCAGCAAAUAUACGGACCAUGUAUGACAACACCAGAAGCAAAAGUCAAAUUUGGUGGCAUGUCAAAAAUAAUUGAGGGAAAAGCUAAGCAAGCUAAAUACACAACAUAAAGAUAAU
((((.((...((((((.....))))))....(((((((.((....))....)))))))))(((((((......))))......((((.....))))..........)))...)))).. ( -18.80)
>consensus
UAUUAGCCAAUAUACAGACCACGUAUGACAACACCAGA______AGUCAAAUUUGGUGGCAUGUCAGAAAUAAUUGAGGGAAAAGCUAAGCAAAAUAAAUACACAUCAUAAAGAUAAU
..(((((....((((.......))))((((.(((((((.............)))))))...))))...................)))))............................. (-15.32 = -15.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:10 2006