| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,135,684 – 5,135,780 |
| Length | 96 |
| Max. P | 0.906847 |
| Location | 5,135,684 – 5,135,780 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -14.66 |
| Consensus MFE | -10.40 |
| Energy contribution | -10.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5135684 96 - 23771897 -CA-------AC-AUGGCUCUCUUUCUUAUAUAGUAUAGGUACUAAACAGUCUAUUCACUGGUAACCCAUACUAGGUAAACAUCAUUUACUUCU--------CAUUCAGCUCA-- -..-------..-..((((............((((((.(((......((((......))))...))).))))))((((((.....))))))...--------.....))))..-- ( -15.10) >DroGri_CAF1 10763 95 - 1 -CU---ACA-AUAAUCUCGCUCUUGCAUACUUAGUAUAGUUACUAAGCAGCCUAAACACUGGUAAUACAUACUAGGUAAAUAUCACUCA---------------UACAUAUAACA -..---...-........((....)).((((((((((.(((((((..............)))))))..))))))))))...........---------------........... ( -15.44) >DroSim_CAF1 8840 96 - 1 -CA-------AC-AUGGCUCUCUUUCUUAUAUAGUAUAGUUACUAAACAGUCUAAUCACUGGUAACCCAUACUAGGUAAAUAUCAUUUACUUCU--------CAUUCAGCUCA-- -..-------..-..((((............((((((.(((((....((((......)))))))))..))))))(((((((...)))))))...--------.....))))..-- ( -15.10) >DroEre_CAF1 8821 96 - 1 -CA-------AC-AUGGCUCUCUUUCUUAUAUAGUAUAGUUACUAAACAGUUUAAUCACUGGUAACCCAUACUAGGUAAAUAUCAUUUACUUCU--------CAUUCAGCUCA-- -..-------..-..((((............((((((.(((((....((((......)))))))))..))))))(((((((...)))))))...--------.....))))..-- ( -15.10) >DroYak_CAF1 8961 97 - 1 ACA-------AC-AUGGCUCUCUUUCUUAUAUAGUAUAGUUACUAAACAGUCUAAUCACUGGUAACCCAUACUAGGUAAAUAUCAUUUACUUUU--------CAUUCACCUCA-- ...-------..-..((..............((((((.(((((....((((......)))))))))..))))))(((((((...)))))))...--------......))...-- ( -13.20) >DroAna_CAF1 9223 110 - 1 -CAACGAAAAAC-AUGGUUCUAUUUCUUAUAUAGUAUAGUUACUAAGCAGUCUAAUCACUGGUAAUCCGUACUAGGUAAAUAUCAU-CACUUUUAAGACAUCCAUUUAAAUCA-- -....((.....-((((..............(((((....)))))....((((.....((((((.....)))))).((((......-....))))))))..)))).....)).-- ( -14.00) >consensus _CA_______AC_AUGGCUCUCUUUCUUAUAUAGUAUAGUUACUAAACAGUCUAAUCACUGGUAACCCAUACUAGGUAAAUAUCAUUUACUUCU________CAUUCAGCUCA__ ..........................((((.((((((.(((((....((((......)))))))))..)))))).)))).................................... (-10.40 = -10.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:50 2006