Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,119,525 – 5,119,645 |
Length | 120 |
Max. P | 0.513192 |
Location | 5,119,525 – 5,119,645 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -56.07 |
Consensus MFE | -48.27 |
Energy contribution | -48.50 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.08 |
Mean z-score | -1.68 |
Structure conservation index | 0.86 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5119525 120 + 23771897 UGGGUGCGGCCGUGGGCCUCGUUCCGCGCGCUUCCGACCUGGUGAUGUCAGGUCCUCCGGGCCUGAAAUUCAUGUUGGAACCGGAGGAGGAGGGACUUCCCGCAGUACCGCCCAAAUUUG ((((((..((.(((((((((.((((.(.((.(((((((...((((..((((((((...))))))))...))))))))))).))).)))))))).....))))).))..))))))...... ( -56.30) >DroSim_CAF1 29 120 + 1 UGGGUGCGGCCGUGGGCCUCGUUCCACGCGCCUCCGACCUGGUAAUGUCGGGUCCUCCUGGCCUGAAAUUCAUGUUGGAACCGGAGGAGGAGGGACUUCCCGCAUUGGCGCCCAAAUUGG ((((((((((((((((......)))))).)))((((((.(((.....(((((.((....)))))))...))).))))))..(((.((((......))))))).....)))))))...... ( -53.90) >DroYak_CAF1 81 117 + 1 UGGGUGCGGCGGUGGGUCUCGUUCCGCGCGCCUCCGACCUGGUGAUGUCCGGUCCUCCUGGCCGGAAAUUCAUGUUGGAACCGGAG---GAGGGACUGCCCGCAGUGCCGCCCAAGUUAG ..((.(((((.((((((...(((((.....((((((.((..((((..(((((.((....)))))))...))))...))...)))))---).))))).))))))...)))))))....... ( -58.00) >consensus UGGGUGCGGCCGUGGGCCUCGUUCCGCGCGCCUCCGACCUGGUGAUGUCAGGUCCUCCUGGCCUGAAAUUCAUGUUGGAACCGGAGGAGGAGGGACUUCCCGCAGUGCCGCCCAAAUUAG ((((((..((.(((((....(((((.....((((((.((..((((..(((((((.....)))))))...))))...))...))))))....)))))..))))).))..))))))...... (-48.27 = -48.50 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:46 2006