| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,110,700 – 5,110,803 |
| Length | 103 |
| Max. P | 0.545740 |
| Location | 5,110,700 – 5,110,803 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.84 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -18.48 |
| Energy contribution | -18.57 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5110700 103 - 23771897 CAUCACCCGGGUCUUCUG--------UUGCAGCCACCUUGGCAUCGCCAAAGGUGUCCGGAUCACCAAAAUCCUGCACCUUUU-UGGUGGACUUCUCUUUGGGUUUCUUUUC ....(((((((((.....--------.....(((.....)))..((((((((((((..((((.......)))).))))))..)-)))))))))......)))))........ ( -30.90) >DroSec_CAF1 4955 103 - 1 CAUCACCCGGAUCUUCUG--------UUGCAGCUACCUUGGCAUCUCCAAAGGUGUCCGGAUCACCAAAGUCCUGCACUUUUU-UGGUGGGCUUUUCUUUGGGUUUUUUUUC ......((((((...(((--------...)))..(((((((.....)).)))))))))))....((((((.((..(.(.....-.))..)).....)))))).......... ( -25.40) >DroSim_CAF1 4983 103 - 1 CAUCACCUGGAUCUUCUG--------UUGCAGCAACUUUGGCAUCGCCAAAGGUGUCCGGAUCACCAAAGUCCUGCACCUUUU-UGGUGGGUUUUUCUUUGGGUUUCUUUUC ......((((((....((--------(....))).(((((((...)))))))..))))))....((((((.((..((((....-.)))))).....)))))).......... ( -29.00) >DroEre_CAF1 20131 103 - 1 UAUCACCCGGAUCUUCUU--------UUGCAACUACCUUGGCAUCGCCAAAGGUGUCCGGAUCACCAAAGUCCUGCACCUUCU-UGCUGGACUUCUCUUUGGGUUUCUUUUC ......((((((......--------........((((((((...))).)))))))))))....(((((((((.(((......-))).))))).....)))).......... ( -28.73) >DroYak_CAF1 5107 103 - 1 CAUCACCCGGAUCUUCUG--------CUACAACUACCUUGGCAUCGCCAAAGGUGUCCGGAUCACCAAAGUCCUUUACCUUUU-UGGUGGACUUCUCUUUGGGUUUCUUUUC ......((((((......--------........((((((((...))).)))))))))))....((((((...((((((....-.)))))).....)))))).......... ( -28.23) >DroAna_CAF1 6797 110 - 1 CAUCUCCGGGAUCCUCUGGAAGACUGUUGAA--UACCUUAGCAUCACCAAAAGUGUCCGGAUCACCAAAGUCCCGUAUCUUUUCCGGUACUUUUUUCUUCGGUUUUUCUUUA .......(..(..((..((((((.((((((.--....))))))))...(((((((.(((((.....((((........))))))))))))))))))))..))..)..).... ( -23.50) >consensus CAUCACCCGGAUCUUCUG________UUGCAGCUACCUUGGCAUCGCCAAAGGUGUCCGGAUCACCAAAGUCCUGCACCUUUU_UGGUGGACUUCUCUUUGGGUUUCUUUUC ......(((((......................((((((((.....)).)))))))))))....((((((...(.((((......)))).).....)))))).......... (-18.48 = -18.57 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:44 2006