Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,104,047 – 5,104,166 |
Length | 119 |
Max. P | 0.591565 |
Location | 5,104,047 – 5,104,166 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.56 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -16.76 |
Energy contribution | -18.32 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.61 |
Structure conservation index | 0.69 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5104047 119 + 23771897 GAUACACGGAACCAUCGCUGUU-UAAAAAUAGCGAGGAAAAUAAAGCGACUGAGAAGCCAGUAGAGAAAACCGAAGAAGCAAGUACAGAGGUUACUCAGUCGAAAGAGGAUAGUUCGGAA ......((((.((.((((((((-....)))))))))).........((((((((.((((..............................)))).))))))))...........))))... ( -30.51) >DroSec_CAF1 296997 119 + 1 GAUACUCGGAACCAACGCUGUU-UAAAAAUACUAAGGAAAAUAAAGCGACUGAGAAGCCAGUAGAGAAAAACGAAGAAGUAAGUACAGAGCUUACUCAGUCGAAAGAGGAUAGUUCGGAA .....((.((((....(((...-.....................)))((((((((((((.(((.......((......))...))).).)))).)))))))...........)))).)). ( -22.86) >DroSim_CAF1 318645 120 + 1 GAUACACGGAACCAACACUAUUUUAAACAUACUAAAGAAAAUAAAGCGACUGAGAAGCCAGUGGAGAAAAACGAAGAAGCAAGUACGGAGGUUACUCAGUCGAAAGAGGAUAGUUCGGAA ...........((...((((((((.......(....).........((((((((.((((..((......................))..)))).))))))))....))))))))..)).. ( -22.15) >DroYak_CAF1 309339 119 + 1 GAUACACGGAACCAUCGCUGUU-UAAAGAUAGUGAAGAACAUGAAACGACUGACAAGCCAGUGGAGAAAAAUGAAGAAACUAGUACAGAAGUUACUCAGCCGAAAGAGGAUAGCUCGGAA ......(((..((.((((((((-....)))))))).............((((......)))))).......(((.(.((((........)))).)))).)))...(((.....))).... ( -21.40) >consensus GAUACACGGAACCAACGCUGUU_UAAAAAUACUAAAGAAAAUAAAGCGACUGAGAAGCCAGUAGAGAAAAACGAAGAAGCAAGUACAGAGGUUACUCAGUCGAAAGAGGAUAGUUCGGAA ......(.((((.(((((((((.....)))))).............((((((((.((((.(((....................)))...)))).))))))))......))).)))).).. (-16.76 = -18.32 + 1.56)
Location | 5,104,047 – 5,104,166 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.56 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -15.96 |
Energy contribution | -16.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.25 |
Mean z-score | -1.63 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5104047 119 - 23771897 UUCCGAACUAUCCUCUUUCGACUGAGUAACCUCUGUACUUGCUUCUUCGGUUUUCUCUACUGGCUUCUCAGUCGCUUUAUUUUCCUCGCUAUUUUUA-AACAGCGAUGGUUCCGUGUAUC ....((((((((......((((((((...((...(((.......(....).......))).))...)))))))).............(((.((....-)).)))))))))))........ ( -27.84) >DroSec_CAF1 296997 119 - 1 UUCCGAACUAUCCUCUUUCGACUGAGUAAGCUCUGUACUUACUUCUUCGUUUUUCUCUACUGGCUUCUCAGUCGCUUUAUUUUCCUUAGUAUUUUUA-AACAGCGUUGGUUCCGAGUAUC (((.((((((.........(((((((.(((((..(((...((......)).......))).))))))))))))(((.....................-...)))..)))))).))).... ( -23.96) >DroSim_CAF1 318645 120 - 1 UUCCGAACUAUCCUCUUUCGACUGAGUAACCUCCGUACUUGCUUCUUCGUUUUUCUCCACUGGCUUCUCAGUCGCUUUAUUUUCUUUAGUAUGUUUAAAAUAGUGUUGGUUCCGUGUAUC ..(((((((((.......((((((((...((.........((......))...........))...))))))))..........(((((.....)))))))))).))))........... ( -18.55) >DroYak_CAF1 309339 119 - 1 UUCCGAGCUAUCCUCUUUCGGCUGAGUAACUUCUGUACUAGUUUCUUCAUUUUUCUCCACUGGCUUGUCAGUCGUUUCAUGUUCUUCACUAUCUUUA-AACAGCGAUGGUUCCGUGUAUC ....((((((((......(((((((...((....)).(((((................)))))....))))))).....((((..............-))))..))))))))........ ( -18.93) >consensus UUCCGAACUAUCCUCUUUCGACUGAGUAACCUCUGUACUUGCUUCUUCGUUUUUCUCCACUGGCUUCUCAGUCGCUUUAUUUUCCUCACUAUUUUUA_AACAGCGAUGGUUCCGUGUAUC ....((((((((.......(((((((...((..............................))...)))))))(((.........................)))))))))))........ (-15.96 = -16.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:36 2006