Locus 1820

Sequence ID 3L_DroMel_CAF1
Location 5,102,981 – 5,103,098
Length 117
Max. P 0.572142
window2841

overview

Window 1

Location 5,102,981 – 5,103,098
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.91
Mean single sequence MFE -30.10
Consensus MFE -27.50
Energy contribution -27.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.91
SVM decision value 0.08
SVM RNA-class probability 0.572142
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5102981 117 - 23771897
CAGUUGCGAAUUCGGUGGCCAACUGAUGAACUUGAACCAAAAAGCAUGAACGGGUA--ACUACUGG-GAAAAACAGCAAAAGUUUACCAUGUAAACGGGCAUAAAUUGUGCCGCCGGAAA
..........((((((((((((...(((..(............((.....(((...--....)))(-......).))....((((((...)))))))..)))...))).))))))))).. ( -28.70)
>DroSec_CAF1 295948 117 - 1
CAGUUGCGAAUUCGGUGGCCAACUGAUGAACUUGAACCAAAAAGCAUGAGCGGGUA--ACUACUGG-GAAAAACAGCAAAAGUUUACCAUGUAAACGGGCAUAAAUUGUGCCGCCGGAAA
..........((((((((((((...(((..((((.(((.....((....)).))).--....(((.-......))))))..((((((...)))))))..)))...))).))))))))).. ( -30.80)
>DroSim_CAF1 317582 117 - 1
CAGUUGCGAAUUCGGUGGCCAACUGAUGAACUUGAACCAAAAAGCAUGAGCGGGUA--ACUACUGG-GAAAAACAGCAAAAGUUUACCAUGUAAACGGGCAUAAAUUGUGCCGCCGGAAA
..........((((((((((((...(((..((((.(((.....((....)).))).--....(((.-......))))))..((((((...)))))))..)))...))).))))))))).. ( -30.80)
>DroYak_CAF1 308276 120 - 1
CAGUUGCAAAUUCGGUGGCCAACCGAUGAACUUGAACCAAAAAGCAUGAACGUGUAAAACUACUGGGGAAAAACAGCAAAAGUUUACCAUGUAAACGGGCAUAAAUUGUGCCGCCGGAAA
..........(((((((((...((((((..(((........))))))..(((((..(((((.(((........)))....)))))..)))))...)))(((.....)))))))))))).. ( -30.10)
>consensus
CAGUUGCGAAUUCGGUGGCCAACUGAUGAACUUGAACCAAAAAGCAUGAACGGGUA__ACUACUGG_GAAAAACAGCAAAAGUUUACCAUGUAAACGGGCAUAAAUUGUGCCGCCGGAAA
..........((((((((((((...(((..(...............................(((........))).....((((((...)))))))..)))...))).))))))))).. (-27.50 = -27.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:34 2006