Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,099,584 – 5,099,704 |
Length | 120 |
Max. P | 0.670143 |
Location | 5,099,584 – 5,099,704 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -28.15 |
Consensus MFE | -26.52 |
Energy contribution | -26.65 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5099584 120 - 23771897 CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC ...((((((((((((((((((........)))(((........)))...))))))).((......))........))))))))....(((((((((..((......))..))))))))). ( -28.50) >DroSec_CAF1 292656 120 - 1 CAAUAAAUUAAUGCUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUAACAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC ...((((((((.(((((((((........)))(((........)))...))))))..((......))........))))))))....(((((((((..((......))..))))))))). ( -28.20) >DroSim_CAF1 314299 120 - 1 CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUGGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC ..................(((........)))((((....((((((...(((((((.....)))))))......((..((((((.......))))))..))....))))))))))..... ( -29.40) >DroYak_CAF1 304946 120 - 1 CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAGGGGCGAAUCGAAUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAAUCCCUUGGCAUUUC .....................(((.((((((((((........))))..(((((((.....)))))))........)))))).))).(((((((((..((......))..))))))))). ( -26.50) >consensus CAAUAAAUUAAUACUCGAGCAUGGAAAGUUGCGCCAUUAGAAGGGCGAAUCGAGUGACACACAUUUGAAAAAUAUUUAAUUUGCCAAAAAUGCCAGUCGAACUGAGUCCUUUGGCAUUUC ...((((((((((((((((((........)))(((........)))...))))))).((......))........))))))))....(((((((((..((......))..))))))))). (-26.52 = -26.65 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:23 2006