Locus 1810

Sequence ID 3L_DroMel_CAF1
Location 5,083,294 – 5,083,405
Length 111
Max. P 0.945547
window2816

overview

Window 6

Location 5,083,294 – 5,083,405
Length 111
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 67.43
Mean single sequence MFE -24.11
Consensus MFE -16.69
Energy contribution -17.03
Covariance contribution 0.34
Combinations/Pair 1.14
Mean z-score -1.25
Structure conservation index 0.69
SVM decision value 1.35
SVM RNA-class probability 0.945547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5083294 111 + 23771897
-------AACAUAAUAAUUGAAGUAUUAGAUCUACAAUAU--AAUAUAUAAUCAGUACUUUCUAACUGGUUCUUAGCUGUGGCAUCCUUGGCGUCUCUCAGACAUCCAGUUGCCUUGGCU
-------.........((((.((........)).))))..--.......(((((((........)))))))...(((((.((((...((((.(((.....)))..)))).)))).))))) ( -22.20)
>DroSim_CAF1 310834 93 + 1
-------GA------------AAUAUUAGAUC-----UAU--CAUAUAGGAUCAGUACUUUCUAACUGGUUCAUAGUGGUGGCAUCCUUGGCGCCU-UCAGACAGCCAGUUGCCUUGGCU
-------((------------((((((.((((-----(..--......))))))))).)))).((((((((......((((.((....)).)))).-......))))))))((....)). ( -26.82)
>DroYak_CAF1 301033 113 + 1
UCUUUUUUUCAUUAUAACUUA------AAACCUACAAGAAUAGAUGUAUGAUCGCUAUUUCCCAACUGGUUCUCAGCUGUGGCAUCCUUGGCGCCU-UCAGACAGCCAGUUGCCUUGGCU
.....................------.......(((((((((.((......)))))))...(((((((((.....(((.(((.........))).-.)))..))))))))).))))... ( -23.30)
>consensus
_______AACAU_AUAA_U_AA_UAUUAGAUCUACAAUAU__AAUAUAUGAUCAGUACUUUCUAACUGGUUCUUAGCUGUGGCAUCCUUGGCGCCU_UCAGACAGCCAGUUGCCUUGGCU
.................................................(((((((........)))))))...(((((.((((...(((((............))))).)))).))))) (-16.69 = -17.03 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:11 2006