Locus 181

Sequence ID 3L_DroMel_CAF1
Location 534,088 – 534,185
Length 97
Max. P 0.547419
window261

overview

Window 1

Location 534,088 – 534,185
Length 97
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -24.68
Consensus MFE -21.46
Energy contribution -21.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.20
Structure conservation index 0.87
SVM decision value 0.03
SVM RNA-class probability 0.547419
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 534088 97 + 23771897
UCACUGGGAACAGGUUCCACCGUCUGGGUUCCCGAAAAC-------AAACAGGUUCCACAUGUCGAACGUGUCCAAAAUGGAUUCCCAAAGGGAAAUUGGUACA
...(((....)))((.(((((.(.((((.(((.......-------..(((.((((........)))).))).......)))..)))).).))....))).)). ( -24.79)
>DroSec_CAF1 8174 97 + 1
UCACUGGAAACAGGUUCCACCGUCUGGGUUCCCGAAAAC-------AAACAGGUUCCACAUGUCGAACGUGUACAAAAUGGAUUCCCAAAGGGAAAUUGGUACA
...(((....)))((.(((((....)).(((((......-------..(((.((((........)))).)))......(((....)))..)))))..))).)). ( -26.40)
>DroSim_CAF1 9050 97 + 1
UCACUGGGAACAGGUUCCACCGUCUGGGUUCCCGAAAAC-------AAACAGGUUCCACAUGUCGAACGUGUCCAAAAUGGAUUCCCAAAGGGAAAUUGGUACA
...(((....)))((.(((((.(.((((.(((.......-------..(((.((((........)))).))).......)))..)))).).))....))).)). ( -24.79)
>DroEre_CAF1 8512 97 + 1
AAUCUGGAAACAGGUUCCACCGUCUGGGUUCCCGAAAAC-------AAACAGGUUCCACAUGUCGAACGUGUCCAACAUUAAUUCCCAAAGGGAAAUUGGUACA
((((((....))))))..(((((.((((((......)))-------..(((.((((........)))).)))))))).....(((((...)))))...)))... ( -24.40)
>DroYak_CAF1 8641 104 + 1
AAUCUGGGAACAGGUUCCACCGUCUGGGUUCCCGAAAACAAAACACAAACAGGUUCCACAUGUCGAACGUGUCCAACAUUAAUUCCCAAAGGGAAAUUGGUACA
....(((((((.((.....))......)))))))........((.((((((.((((........)))).)))..........(((((...))))).)))))... ( -23.00)
>consensus
UCACUGGGAACAGGUUCCACCGUCUGGGUUCCCGAAAAC_______AAACAGGUUCCACAUGUCGAACGUGUCCAAAAUGGAUUCCCAAAGGGAAAUUGGUACA
...(((....)))((.(((.....(((....)))..............(((.((((........)))).)))..........(((((...)))))..))).)). (-21.46 = -21.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:06 2006