Locus 1808

Sequence ID 3L_DroMel_CAF1
Location 5,082,638 – 5,082,738
Length 100
Max. P 0.602816
window2813

overview

Window 3

Location 5,082,638 – 5,082,738
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -27.70
Consensus MFE -26.99
Energy contribution -26.77
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.51
Structure conservation index 0.97
SVM decision value 0.14
SVM RNA-class probability 0.602816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5082638 100 + 23771897
GCUGUUUCUGUUGCAGCGAAUGCGGCAAAUGCCGCCAGCGACUUUCGUCUGCUUUGUUGUAAAAGAAUCCGCCCAGAAUCACCGCCCCUCCUACCUUUCU
((.(.((((.((((((((((.(((((....)))))..(((((....))).)))))))))))).)))).).))............................ ( -28.60)
>DroSec_CAF1 288902 100 + 1
GCUGUUUCUGUUGCAGUGAAUGCGGCAAAUGCCGCCAGCGACUUUCGUCUGCUUUGUUGUAAAAGAAUCCGCCCAGAAUCACCGCCCCUCCCACCUUCCU
((.(.((((.((((((..((.(((((....)))))..(((((....))).))))..)))))).)))).).))............................ ( -25.90)
>DroSim_CAF1 310246 100 + 1
GCUGUUUCUGUUGCAGCGAAUGCGGCAAAUGCCGCCAGCGACUUUCGUCUGCUUUGUUGUAAAAGAAUCCGCCCAGAAUCACCGCCCCUCCCACCAUCCA
((.(.((((.((((((((((.(((((....)))))..(((((....))).)))))))))))).)))).).))............................ ( -28.60)
>consensus
GCUGUUUCUGUUGCAGCGAAUGCGGCAAAUGCCGCCAGCGACUUUCGUCUGCUUUGUUGUAAAAGAAUCCGCCCAGAAUCACCGCCCCUCCCACCUUCCU
((.(.((((.((((((((((.(((((....)))))..(((((....))).)))))))))))).)))).).))............................ (-26.99 = -26.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:08 2006