Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,081,176 – 5,081,333 |
Length | 157 |
Max. P | 0.860434 |
Location | 5,081,176 – 5,081,293 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.78 |
Mean single sequence MFE | -29.65 |
Consensus MFE | -26.80 |
Energy contribution | -27.55 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 0.90 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5081176 117 + 23771897 CACCCUUUGGAAAAACGUGCAACAGGGUGCUUCUAUUUUUCUUGCCUGGCAUUUUUCCGUUGACCUUCUUCU---CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGA ..(((...((((((..((.((((((.((((............(((...))).......((((.(((......---..)))))))......))))..))))))))))))))...))).... ( -28.40) >DroSec_CAF1 287442 117 + 1 CACCCUUUGGAAAAACGUGCAACAGGGUGCUUCUAUUUUUCUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU---CUGGGCAACAUUUCUGCACUGUUGUUGGCUUUUCUUUUGGGCCGA ..(((...((((((..((.(((((((((((.................((.......))(((((((.......---..)))))))......))))).))))))))))))))...))).... ( -32.00) >DroSim_CAF1 308786 117 + 1 CACCCUUUGGAAAAACGUGCAACAGGGUGCUUCUAUUUUUCUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU---CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGA ..(((...((((((..((.((((((.((((.................((.......))(((((((.......---..)))))))......))))..))))))))))))))...))).... ( -31.60) >DroYak_CAF1 298884 120 + 1 CACCCUACGGAAAAACGUGCAACAGGGUGCUUCUAUUUUUCUUGCCUGCUAUUUUUCCGUUGUCCUUCUUCUUCACUGGGCCACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGA ..(((.(((((((((...(((.(((((............)))))..)))..))))))))).................((((((((...((....)).)).)))))).......))).... ( -26.60) >consensus CACCCUUUGGAAAAACGUGCAACAGGGUGCUUCUAUUUUUCUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU___CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGA ..(((...((((((.(..(((((...((((.................((.......))(((((((............)))))))......)))).)))))..).))))))...))).... (-26.80 = -27.55 + 0.75)
Location | 5,081,216 – 5,081,333 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.62 |
Mean single sequence MFE | -33.88 |
Consensus MFE | -31.33 |
Energy contribution | -32.08 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.92 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5081216 117 + 23771897 CUUGCCUGGCAUUUUUCCGUUGACCUUCUUCU---CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGACUGUUGUAAUUGUUGCUAAAGCAGCAAAACGUCGACGCUG .......(((........((((.(((......---..)))))))...((.((((((..((((((((.......))))))))..))))..(((((((....)))))))...)).)).))). ( -34.30) >DroSec_CAF1 287482 117 + 1 CUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU---CUGGGCAACAUUUCUGCACUGUUGUUGGCUUUUCUUUUGGGCCGACUGUUGUAAUUGUUGCUAAAGCAGCAAAACGUCGACGCUG .......((.......))(((((((.......---..)))))))......((......((((((((.......)))))))).((((...(((((((....))))))).....)))))).. ( -34.00) >DroSim_CAF1 308826 117 + 1 CUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU---CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGACUGUUGUAAUUGUUGCUAAAGCAGCAAAACGUCGACGCUG ..(((..((.......))(((((((.......---..)))))))......)))((((.((((((((.......)))))))).((((...(((((((....))))))).....)))))))) ( -36.40) >DroYak_CAF1 298924 120 + 1 CUUGCCUGCUAUUUUUCCGUUGUCCUUCUUCUUCACUGGGCCACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGACUGUUGUAAUUGUUGCUAAAGCAGCAAAACGUCGACGCUG .......((.........((.((((............)))).))...((.((((((..((((((((.......))))))))..))))..(((((((....)))))))...)).)).)).. ( -30.80) >consensus CUUGCCUGGUAUUUUUCCGUUGUCCUUCUUCU___CUGGGCAACAUUUCUGCACAGUUGUUGGCUUUUCUUUUGGGCCGACUGUUGUAAUUGUUGCUAAAGCAGCAAAACGUCGACGCUG ...((.............(((((((............)))))))...((.((((((..((((((((.......))))))))..))))..(((((((....)))))))...)).)).)).. (-31.33 = -32.08 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:02 2006