| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,080,506 – 5,080,621 |
| Length | 115 |
| Max. P | 0.766380 |
| Location | 5,080,506 – 5,080,621 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.66 |
| Mean single sequence MFE | -35.60 |
| Consensus MFE | -30.83 |
| Energy contribution | -32.17 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5080506 115 - 23771897 CCAAUUCCCGCUGCACGAUGCAUCUCAUUGCUGGCCAAGAGCGAUGCGAUGGGUUGCGAUGCCAAGCAGAUGGAGAUGCAGAUGCAGAUACAUUUGGAUGCGAUGCAAACGGGGG .....((((((((((...((((((((.((((((((.....(((((.(...).)))))...))).)))))...))))))))..)))))...........(((...)))..))))). ( -43.20) >DroSec_CAF1 286826 96 - 1 CCAAUUCCCGCUGCACGAUGCAUCUCAUUGCUGGCCAAGAGCGAUGCGAUGGGUUGCGAUGCCAAGCAGAUGGAGAUGCAGAUGCAGAUACAUUUG------------------- .(((......(((((...((((((((.((((((((.....(((((.(...).)))))...))).)))))...))))))))..)))))......)))------------------- ( -35.90) >DroSim_CAF1 308145 90 - 1 CCAAUUCCCGCUGCACGAUGCAUCUCAUUGCUGGCCAAGAGCGAUGCGAUGGGUUGCGAUGCCAAGCAGAUGGAGAUG------CAGAUACAUUUG------------------- ..................((((((((.((((((((.....(((((.(...).)))))...))).)))))...))))))------))..........------------------- ( -27.70) >consensus CCAAUUCCCGCUGCACGAUGCAUCUCAUUGCUGGCCAAGAGCGAUGCGAUGGGUUGCGAUGCCAAGCAGAUGGAGAUGCAGAUGCAGAUACAUUUG___________________ .(((......(((((...((((((((.((((((((.....(((((.(...).)))))...))).)))))...))))))))..)))))......)))................... (-30.83 = -32.17 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:58 2006