Locus 1803

Sequence ID 3L_DroMel_CAF1
Location 5,079,102 – 5,079,218
Length 116
Max. P 0.525744
window2802

overview

Window 2

Location 5,079,102 – 5,079,218
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.32
Mean single sequence MFE -31.99
Consensus MFE -26.74
Energy contribution -26.66
Covariance contribution -0.08
Combinations/Pair 1.07
Mean z-score -1.26
Structure conservation index 0.84
SVM decision value -0.02
SVM RNA-class probability 0.525744
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5079102 116 - 23771897
GGGACCUAAUGGGCGGAUGG----GGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGAUAGUAACCUGAUGCGAUAAGUAUUUGUGCUGUGGCAGCCAGCAUCUAAGGCUGGAGGA
....(((....((((((((.----.(((.......((((((....))))))........(.((((((....(((((.....)))))..)))))).)..)))..)))))...)))..))). ( -34.50)
>DroSec_CAF1 285486 111 - 1
GGGACCUAAUGGGCGGAUGG----GGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGAUAGUAACCUGAUGCGAUAAGUAUUUGUGCUGUGGC-----GCAUCUGAGGCUGGAGGA
....(((....(((.....(----((..((((...((((((....))))))...........))))..)))((((((...((((....))))....)-----)))))....)))..))). ( -30.44)
>DroSim_CAF1 306759 111 - 1
GGAACCUAAUGGGCGGAUGG----GGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGAUAGUAACCUGAUGCGAUAAGUAUUUGUGCUGUGGC-----GCAUCUGGGGCUGGAGGA
....(((....(((......----...........((((((....)))))).................(((((((((...((((....))))....)-----))))).))))))..))). ( -30.60)
>DroEre_CAF1 292511 111 - 1
GGAACCUAAUGGGCGGAUGG----GGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGAUGGUAACCUGAUGCGAUGAGUAUUUAUGCUGUGGU-----GCAUCUGAGGCUGGAGGU
...((((....(((...(.(----(((((((....((((((....))))))..........((((((....(((((.....)))))..)))))))))-----)).))).).)))..)))) ( -30.00)
>DroYak_CAF1 296804 115 - 1
GGCACCUAAUGGGCGGAUGGGGGGGGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGGUGGUAACCUGAUGCGAUAAGUAUUUGUGCUGUGCU-----GCAGCUGAGGCUGGAGGA
(((((..((((..((.((.(((...(.((((....((((((....)))))).........)))).)..))).)).)).....)))).)))))...((-----.((((....)))).)).. ( -34.42)
>consensus
GGAACCUAAUGGGCGGAUGG____GGGCACUGAAAAGCCGGGGAACUGGUUAAAUAUAAUGAUAGUAACCUGAUGCGAUAAGUAUUUGUGCUGUGGC_____GCAUCUGAGGCUGGAGGA
....(((......((((((......(.(((.....((((((....))))))............((((....(((((.....)))))..))))))).)......)))))).......))). (-26.74 = -26.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:57 2006