Locus 1801

Sequence ID 3L_DroMel_CAF1
Location 5,077,555 – 5,077,675
Length 120
Max. P 0.853222
window2798

overview

Window 8

Location 5,077,555 – 5,077,675
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.49
Mean single sequence MFE -32.28
Consensus MFE -30.88
Energy contribution -30.76
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.96
SVM decision value 0.80
SVM RNA-class probability 0.853222
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5077555 120 - 23771897
AAAAAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCCAACCAAAUGGGAAUCGAGUGGUUUGAGUGUUCGAGGGCAGAAGGUUCUGGUUCUUUAUGGCUAGA
..............((((((..((....))......(((((((....(((((((.(((((..((.....))..))))).).)))))))))))))))))))(((((((......))))))) ( -32.10)
>DroSec_CAF1 283947 119 - 1
AA-AAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCCAACCAAAUGGGAAUCGAGUGGUUUGAGUGUUCGAGGGCAGAAGGUUCUGGUUCUUUAUGGCUGGA
..-...........((((((..((....))......(((((((....(((((((.(((((..((.....))..))))).).)))))))))))))))))))((..(((......)))..)) ( -31.10)
>DroSim_CAF1 305218 119 - 1
AA-AAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCCAACCAAAUGGGAAUCGAGUGGUUUGAGUGUUCGAGGGCAGAAGGUUCUGGUUCUUUAUGGCUGGA
..-...........((((((..((....))......(((((((....(((((((.(((((..((.....))..))))).).)))))))))))))))))))((..(((......)))..)) ( -31.10)
>DroEre_CAF1 291009 119 - 1
AA-AAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCGAACCAAAUGGGAAACGAGUGGUUUGAGUGUUCGAGGGCAGAAGUUUCUGGUUCUUUAUGGCUGGA
..-((((((.............((....)).....((((((((....(((((((((((((..(.(....).).))))))).))))))))))))))))))))(..(((......)))..). ( -34.40)
>DroYak_CAF1 295227 119 - 1
AA-AAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCCGACCAAAUGGAAAACGAGUGGUUUGAGUGUUCGAGGGCAGAAGGUUCUGGUUCUUUAUGGCUGGA
..-...........((((((..((....))......(((((((....(((((((.(((((..((.....))..))))).).)))))))))))))))))))((..(((......)))..)) ( -32.70)
>consensus
AA_AAACUUAACAUACUUUCAGGCAUUCGCAUAAAUUGCCUUUUAAUGGACACCCAACCAAAUGGGAAUCGAGUGGUUUGAGUGUUCGAGGGCAGAAGGUUCUGGUUCUUUAUGGCUGGA
..............((((((..((....))......(((((((....(((((((.(((((..((.....))..))))).).)))))))))))))))))))(((((((......))))))) (-30.88 = -30.76 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:53 2006