Locus 180

Sequence ID 3L_DroMel_CAF1
Location 533,190 – 533,287
Length 97
Max. P 0.849097
window260

overview

Window 0

Location 533,190 – 533,287
Length 97
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.22
Mean single sequence MFE -17.71
Consensus MFE -14.88
Energy contribution -14.72
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.84
SVM decision value 0.78
SVM RNA-class probability 0.849097
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 533190 97 - 23771897
CUAUCAGUAAUGAAAAGGCAACAAAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGAAAAA---AACCAGAAAUGUGUAUGUAUGUGAAA
(.((((((..(....)((((.(((((.....(....).))))).)))))))))).)(((.(((........---.((((....)).)).))).))).... ( -17.20)
>DroSec_CAF1 7299 92 - 1
CUAUCAGUAAUGAAAAGGCAACAAAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGAAAAA----ACAAGAAAUGUGUA----UGUGGAA
...(((((..(....)((((.(((((.....(....).))))).)))))))))((.(((.(((.(......----........).))).----))).)). ( -19.04)
>DroSim_CAF1 8206 93 - 1
CUAUCAGUAAUGAAAAGGCAACAAAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGAAAAA---AAAAAGAAAUGUGUA----UGUGGAA
...(((((..(....)((((.(((((.....(....).))))).)))))))))((.(((.(((.(......---.........).))).----))).)). ( -18.96)
>DroEre_CAF1 7558 91 - 1
CUAUCAGUAAUGAAAAGGCAACAAAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGAAAAA-----AAAGAAAGAAAUA----UGUGGAA
...(((((..(....)((((.(((((.....(....).))))).)))))))))((.(((............-----.............----))).)). ( -15.11)
>DroYak_CAF1 7799 96 - 1
CUAUCAGUAAUGAAAAGGCAACAGAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGGGAAAGAAAAUAAGAAAUAUGUA----UGUGGAA
...(((((..(....)((((.(((((.....(....).))))).)))))))))((.(((.(((......................))).----))).)). ( -18.25)
>consensus
CUAUCAGUAAUGAAAAGGCAACAAAGUAAGCGGAAACUUUUUGAUGCCGCUGAUCGACAGGCAGAGAAAAA___AAAAAGAAAUGUGUA____UGUGGAA
...(((....)))...((((.(((((.....(....).))))).))))(((........)))...................................... (-14.88 = -14.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:05 2006