Locus 18

Sequence ID 3L_DroMel_CAF1
Location 55,002 – 55,114
Length 112
Max. P 0.969430
window22

overview

Window 2

Location 55,002 – 55,114
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 91.88
Mean single sequence MFE -34.48
Consensus MFE -29.42
Energy contribution -30.86
Covariance contribution 1.44
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.85
SVM decision value 1.64
SVM RNA-class probability 0.969430
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 55002 112 - 23771897
AGCUAACGUAGAUCAUUGUCCUUGGUCGGGUUCAUUCACAUUCAAAUGGAGCGAGAGCAUUGGAAUGAGAGGGAUUCGGUGCUGGGGCAGAAUGGAAUAAAUGGAAUGGCAC
.((((.(((...(((((.((((..(((((((((.(((.(((((.(((...((....))))).))))).))))))))))..))..))).).))))).....)))...)))).. ( -32.10)
>DroSec_CAF1 4840 112 - 1
AGCUAACGUAGAUCAUUGUCCUUGGCCGGGUUCAUUCACAUUCAAAUGGAGCGAGAGCAUUGGAAUGAGAAGGAUUCGGUGCGGGGGCAGAAUGGAACGAAUGGAAUGGCAC
.((((.(((.(.((.((((((((((((((((((.(((.(((((.(((...((....))))).))))).)))))))))))).)))))))))....)).)..)))...)))).. ( -38.50)
>DroSim_CAF1 4769 112 - 1
AGCUAACGUAGAUCAUUGUCCUUGGCUGGGUUCAUUCACAUUCAAAUGGAGCAAGAGCAUUGGAAUGAGAAGGAUUCGGUGCGGGGGCAGAAUGGAACGAAUGGAAUGGCAC
.((((.(((.(.((.((((((((((((((((((.(((.(((((.((((.........)))).))))).)))))))))))).)))))))))....)).)..)))...)))).. ( -35.10)
>DroEre_CAF1 4832 112 - 1
AGCUGUCGUAGAUCAUUGUCCUUGGCCGGGUUCAUUCACAUUAAAAUGGAGCGGGAACAUGGGAAUGAGACGGAUUCGGUGCGGGGGCAGAAUGGAACGGAUGGAAAGGCAC
.(((.((((.(.((.((((((((((((((((((..((.((((...(((.........)))...)))).)).))))))))).)))))))))....)).)..))))...))).. ( -34.20)
>DroYak_CAF1 4783 111 - 1
AGCUGUCGUAGAUCAUUGUCCUUGGCCGGGUUCAUUCACAUUCAAAUGGAACGAGAACAUGGAAAUGA-ACGGAUUCGGUGCGGGGGCAGAAUGGAACAGAUGGAAGGGCAC
.(((.((((...(((((((((((((((((((((.((((..((((..((.........))))))..)))-).))))))))).))))))))..)))).....))))...))).. ( -32.50)
>consensus
AGCUAACGUAGAUCAUUGUCCUUGGCCGGGUUCAUUCACAUUCAAAUGGAGCGAGAGCAUUGGAAUGAGAAGGAUUCGGUGCGGGGGCAGAAUGGAACGAAUGGAAUGGCAC
.((((.(((.(.((.((((((((((((((((((.(((.(((((.((((.........)))).))))).)))))))))))).)))))))))....)).)..)))...)))).. (-29.42 = -30.86 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:59 2006