Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,076,655 – 5,076,775 |
Length | 120 |
Max. P | 0.893024 |
Location | 5,076,655 – 5,076,775 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -39.32 |
Consensus MFE | -39.20 |
Energy contribution | -39.24 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 1.00 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.893024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5076655 120 + 23771897 GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -40.20) >DroSec_CAF1 283048 120 + 1 GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -40.20) >DroSim_CAF1 304326 120 + 1 GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCCCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -43.00) >DroEre_CAF1 290097 120 + 1 GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCAGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). ( -38.40) >DroYak_CAF1 294256 120 + 1 GGUGGUGGCAAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCACUGCACUUUGCUCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..((((.((.....((..((....))..))......)).)))).......))))).)))))))). ( -34.80) >consensus GGUGGUGGCUAACUUUUCAUUUCAUUUAAUCAGCGGCAGGAACAGCGAACCGCUGCCGCAGCGGAAAACUUUUCAUGUUUGGGAACACUUGCCGCUGCACUUUGCUCUGCGGUUGACACA .(((((((........)))).........(((((.(((((..(((((...)))))..(((((((.....((..((....))..))......))))))).......))))).)))))))). (-39.20 = -39.24 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:51 2006