Locus 1796

Sequence ID 3L_DroMel_CAF1
Location 5,074,846 – 5,074,965
Length 119
Max. P 0.842576
window2789

overview

Window 9

Location 5,074,846 – 5,074,965
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.33
Mean single sequence MFE -28.14
Consensus MFE -14.52
Energy contribution -16.48
Covariance contribution 1.96
Combinations/Pair 1.13
Mean z-score -2.10
Structure conservation index 0.52
SVM decision value 0.76
SVM RNA-class probability 0.842576
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5074846 119 + 23771897
UUGCUUAGGGGAAGUUACGCUACCAAAGACAAAACUUAUAUGGUAGCUCCCGUAUCGUUUUUAUAGCUUUUAUC-CCAGCAUAAACGACUGAAAUUCCUUAACCCCUGAGAGCCGAAAAU
...((((((((.......((((((((((......)))...))))))).......((((((.....(((......-..)))..))))))..............)))))))).......... ( -30.50)
>DroSec_CAF1 281248 120 + 1
UUACUUAGGGGAAGUUAUGUUUCCAUAUACAAAACUUAUAUGGUAGCUCCACUAUCAUUUUUAUCGCUUUUUUCCCCAGCAUAAGAGACUGAAAUUCCUUAACCCCUGAGAGCCGAAAAU
...((((((((.(((...(((.(((((((.......))))))).)))...))).((((((((((.(((.........))))))))))..)))..........)))))))).......... ( -28.90)
>DroSim_CAF1 302543 113 + 1
UUACUUAGGGGAAGUUAUGUUUCCAAAGACAAAACUUAUA-------UCCAGUAUCAUUUUUAUCGCUUUUUUCCCCAGCAAAAAAGACUGAAAUUCCUCAACCCCUGAGAGCCGAAAAU
...(((((((((((((.((((......)))).)))))...-------..((((....(((((...(((.........))).))))).))))...........)))))))).......... ( -25.50)
>DroEre_CAF1 288313 103 + 1
UUGCUAAGGGG-----------------UCAAAACUUAUAUGGCAGCUGCCGCAACGUUCUUAUCGCUAUUUUGGCCAGCAUAAAAGACGGAAAUUCUUCAGCCCCUGAGAGCCGAGAAU
..(((.(((((-----------------(............(((....)))....((((.((((.(((.........)))))))..))))...........))))))...)))....... ( -23.70)
>DroYak_CAF1 292320 120 + 1
UUGCUCAGGGGGAGUUAUAUUUCCAUAGUUAAAACUUAUAUGGUAGCUCCCGUAACGUUCUUAUCGUUUUUUGGCCCAGCACAAGAGACUGAAAUUCUUGAACCCCUUAGAGCCGAAAAU
..(((((((((((((((.....(((((...........))))))))))))).....((((...((((((((((((...)).)))))))).)).......)))).)))..))))....... ( -32.10)
>consensus
UUGCUUAGGGGAAGUUAUGUUUCCAAAGACAAAACUUAUAUGGUAGCUCCCGUAUCGUUUUUAUCGCUUUUUUCCCCAGCAUAAAAGACUGAAAUUCCUCAACCCCUGAGAGCCGAAAAU
...((((((((...........................(((((......)))))...(((((((.(((.........))))))))))...............)))))))).......... (-14.52 = -16.48 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:44 2006