Locus 1795

Sequence ID 3L_DroMel_CAF1
Location 5,073,410 – 5,073,529
Length 119
Max. P 0.993184
window2788

overview

Window 8

Location 5,073,410 – 5,073,529
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -26.62
Consensus MFE -22.64
Energy contribution -22.24
Covariance contribution -0.40
Combinations/Pair 1.11
Mean z-score -2.26
Structure conservation index 0.85
SVM decision value 2.38
SVM RNA-class probability 0.993184
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5073410 119 - 23771897
CACUU-UGGCGAAAGCAAAACUUUCACUGAAAUGCAUAUCACAUUUCGUGAACAUUUGCAGUUUAGAAAAUUCCGAGAGUAUUUCUUAAUUUCGCAACAAUUUUCAGCUCCAUUGCUCCU
.....-..(((((((((((...(((((.((((((.......)))))))))))..))))).....(((((((((...)))).)))))...))))))..........(((......)))... ( -25.90)
>DroSec_CAF1 279924 119 - 1
CACUU-UGGUGAAAGCAAAACUUUCACUGGAAUGCAUAUCACAUUUCGUGAACGUUUGCAGUUUAGAAAAUUCCGAGAGUGUUUCUUAAUUUCGCAACAAUUUUCAGCUCCAUUGCUCCU
...((-..(((((((.....)))))))..)).((((..((((.....)))).....)))).....(((((((.(((((.((.....)).)))))....)))))))(((......)))... ( -26.20)
>DroSim_CAF1 301221 119 - 1
CACUU-UGGUGAAAGCAAAACUUUCACUGGAAUGCAUAUCACAUUUCGUGAACGUUUGCAGUUUAGAAAAUUCCGAGAGUGUUUCUUAAUUUCGCAACAAUUUUCAGCUCCAUUGCUCCU
...((-..(((((((.....)))))))..)).((((..((((.....)))).....)))).....(((((((.(((((.((.....)).)))))....)))))))(((......)))... ( -26.20)
>DroEre_CAF1 286864 119 - 1
CACUU-UGGUGAAAGCAAAACUUUCACCGGAAUGCAUAUCACAUUUCGUGAACAUUUGCAGUUUAGAAAAUUCCGAGAGUAUUUUUUAAUUUUGCAACAAUUUUCAGCUCCAUUGCUCCC
(((..-.((((((((.....))))))))((((((.......))))))))).....((((((.(((((((((..(....).)))))))))..))))))........(((......)))... ( -30.10)
>DroYak_CAF1 290843 120 - 1
CACUUUUGGUGAAAGCAAAACUUUCACUGGAAUGCAUAUCACAUUUCGUGCACAUUUGCAGUUUAGAAAAUUCCGAGAGCAUUUCUUAAUUUUGCAACAAUUUUCAACUCCAUUGCACCC
.......((((((((.....))))))))((((((.......))))))(((((....((.((((..(((((((......(((...........)))...))))))))))).)).))))).. ( -24.70)
>consensus
CACUU_UGGUGAAAGCAAAACUUUCACUGGAAUGCAUAUCACAUUUCGUGAACAUUUGCAGUUUAGAAAAUUCCGAGAGUAUUUCUUAAUUUCGCAACAAUUUUCAGCUCCAUUGCUCCU
(((....((((((((.....))))))))((((((.......))))))))).......(((((...(((((((.(((((.((.....)).)))))....)))))))......))))).... (-22.64 = -22.24 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006