Locus 1791

Sequence ID 3L_DroMel_CAF1
Location 5,070,955 – 5,071,075
Length 120
Max. P 0.995157
window2777

overview

Window 7

Location 5,070,955 – 5,071,075
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.42
Mean single sequence MFE -31.30
Consensus MFE -30.24
Energy contribution -30.08
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.97
SVM decision value 2.55
SVM RNA-class probability 0.995157
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5070955 120 + 23771897
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAGCACGCCCAUUUCCGGAUAAAUGAGUGCAAAUUUAUGUCCUCGCAGAGCUUCCGAGGGCUAAAAACGAACU
.......(((((...(((((((((.....((.(((((((......))))))).))((......))..)))))))))...))))).(((((((.........)))))))............ ( -33.70)
>DroSec_CAF1 277466 120 + 1
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAGCACGCCCAUUUCCGGAUAAAUGAGUGCAAAUUUAUGUCCUCGCAGAGCUUCCGAGGGCUAAAAACGAACU
.......(((((...(((((((((.....((.(((((((......))))))).))((......))..)))))))))...))))).(((((((.........)))))))............ ( -33.70)
>DroSim_CAF1 298746 120 + 1
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAACACGCCCAUUUCCGGAUAAAUGAGUGCAAAUUUAUGUCCUCGCAGAGCUUCCGAGGGCUAAAAACGAACU
........((((((....)))))).((((((((...((((.....(((.....)))......((((....((((..((......))..)))).......)))).))))...)))))))). ( -28.20)
>DroEre_CAF1 284372 120 + 1
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAGUACGCCCAUUUCCGGAUAAAUGAGUGCAAAUUUAUGUCCUCGCAGAGCUUCCGAGGGCUAAAAAAGCAGU
.............(((((((((((.....((.(((((((......))))))).))((......))..)))))))))....((((.(((((((.........)))))))))))...))... ( -31.90)
>DroYak_CAF1 288286 120 + 1
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAGUACGCCCAUUUCCGGAUAAAUGAGUGAAAAUUUAUGUCCUUGCAAAGCUACUGAGUGCAACAACAGUACA
.......(((((...(((((((((.....((.(((((((......))))))).))((......))..)))))))))...)))))(((..(((((...(....)..)))))..)))..... ( -29.00)
>consensus
UCUAAACUAAAUGGCCACUCAUUUUGUUUGUUUGCUGCUCACUUUGGCAGCACGCCCAUUUCCGGAUAAAUGAGUGCAAAUUUAUGUCCUCGCAGAGCUUCCGAGGGCUAAAAACGAACU
.......(((((...(((((((((.....((.(((((((......))))))).))((......))..)))))))))...))))).(((((((.........)))))))............ (-30.24 = -30.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:31 2006