Locus 1790

Sequence ID 3L_DroMel_CAF1
Location 5,070,798 – 5,070,916
Length 118
Max. P 0.500000
window2776

overview

Window 6

Location 5,070,798 – 5,070,916
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.87
Mean single sequence MFE -34.10
Consensus MFE -26.16
Energy contribution -26.64
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.73
Structure conservation index 0.77
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5070798 118 + 23771897
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUGACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCUGUUGGCCGUAAACAAUGCUGUCAUUCCGGUAGCAG--GGGGUUAA
...........................((((((.((((.(((......))).))))..(((..(((........)))..)))........((((..(.....)..)))))--)))))... ( -31.90)
>DroSec_CAF1 277320 115 + 1
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUGACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCU---GGCCGUAAACAAUGCUGUCAUUCCGGCAGCAG--GGGGCUUA
.......................((((.((((..((((.(((......))).))))..((((((((....)))).---))))........(((((((.....))))))))--))))))). ( -35.30)
>DroSim_CAF1 298600 115 + 1
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUGACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCU---GGCCGUAAACAAUGCUGUCAUUCCGGCAGCAG--GGGGCUUA
.......................((((.((((..((((.(((......))).))))..((((((((....)))).---))))........(((((((.....))))))))--))))))). ( -35.30)
>DroEre_CAF1 284225 115 + 1
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUUACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCU---GGUCGUAAACAAUGCUGUCAUUCCGGCAGCAG--GGGGUUAA
...........................((((((............((.(((((((((((.....)))).))))))---).))........(((((((.....))))))))--)))))... ( -34.60)
>DroYak_CAF1 288137 117 + 1
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUGACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCU---GGCCGUAAACAAUGCUGUCAUUCCCUCAGCAGCGGGGCUUAC
.........................(((..((((.(((.((((..(((..((((((.(((((((((....)))).---)))))........)))))).)))..))))))).))))..))) ( -33.40)
>consensus
ACAUCGAAUUAGUUAAUUGCAUAAAGUACCCCUCACUGACUGAUAGAGCAGACAGUUUGGCUGACAAAGUUGUCU___GGCCGUAAACAAUGCUGUCAUUCCGGCAGCAG__GGGGUUAA
............................((((..((((.(((......))).))))..((((((((....))))....))))........(((((((.....)))))))...)))).... (-26.16 = -26.64 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:30 2006