Locus 1785

Sequence ID 3L_DroMel_CAF1
Location 5,067,323 – 5,067,442
Length 119
Max. P 0.841429
window2763

overview

Window 3

Location 5,067,323 – 5,067,442
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -33.16
Consensus MFE -29.16
Energy contribution -29.44
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.49
Structure conservation index 0.88
SVM decision value 0.75
SVM RNA-class probability 0.841429
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5067323 119 - 23771897
UUAGGCCAAUUGGCAGGAUAUCAGGGCAAAAUCAAGAGCCACAA-AAUUCGUAUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGUUUGGCCAGAGA
...((((((..(((..(((..((.(......(((...(((((((-(((((((...........))))))))))....))))...))).....).))...)))..)))..))))))..... ( -32.60)
>DroSec_CAF1 273842 119 - 1
UUAGGCCAAUUGGCAGGACAUCAGGGCAAAAUCAAGAGCCGCAA-AUUUUGUAUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGUUUGGACCGAGA
...((((((..(((..(((.....(((..........)))(((.-.((((((...((((((.((((.......)))).)).)))).))))))..)))..)))..)))..)))).)).... ( -31.20)
>DroSim_CAF1 295172 119 - 1
UUAGGCCAAUUGGCAGGACAUCAGGGCAAAAUCAAGAGCCGCAA-AUUUUGUAUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGUUUGGCCAGAGA
...((((((..(((..(((.....(((..........)))(((.-.((((((...((((((.((((.......)))).)).)))).))))))..)))..)))..)))..))))))..... ( -35.00)
>DroEre_CAF1 280741 118 - 1
UUAGGCCAAUUGGCAGGACAUCAGGGCAAAAUCAAGAGCCGCAA-AUUUUGUCUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGU-UGGCCAGAGA
...(((((((.(((..(((.....(((..........)))(((.-.(((((((..((((((.((((.......)))).)).)))))))))))..)))..)))..)))))-)))))..... ( -35.20)
>DroYak_CAF1 284583 119 - 1
UUAGGCCAAUUGGCAGGACAUCAGGGCAAAAUCAAGAGCCGCAAAAUUUCGUCUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGU-UGGCCAGAGA
...(((((((.(((..(((..((.(......(((...(((((((((((.(((..((...))..)))))))))))....)))...))).....).))...)))..)))))-)))))..... ( -31.80)
>consensus
UUAGGCCAAUUGGCAGGACAUCAGGGCAAAAUCAAGAGCCGCAA_AUUUUGUAUAGUCUCUCAAUGAAUUUUGCAUUUGGCAGAUGACAAAACGUGUUGGUUUAGCUGUUUGGCCAGAGA
...((((((.((((..(((..((.(((((((((((((((.((........))...).))))...)).))))))).((((........)))).).))...)))..)))).))))))..... (-29.16 = -29.44 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:17 2006