Locus 1783

Sequence ID 3L_DroMel_CAF1
Location 5,066,897 – 5,067,017
Length 120
Max. P 0.704208
window2760

overview

Window 0

Location 5,066,897 – 5,067,017
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -29.90
Consensus MFE -30.12
Energy contribution -29.90
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.53
Structure conservation index 1.01
SVM decision value 0.36
SVM RNA-class probability 0.704208
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5066897 120 - 23771897
GAAGCCACAAUUUUCAGCAGGAAGAGCAACAAAAUAUUGUGUGUGCAAAGUCCGAAAACCACUUUGGGCCCAACUUAUUUGUGGCUAACAAAUUUGCAUGCAUUGACGCAUCAUCAUCGC
((((((((((......(((.(....((((.......)))).).)))...(((((((......))))))).........))))))))........((.((((......))))))))..... ( -28.10)
>DroEre_CAF1 280319 120 - 1
GAAGCCACAAUUUUCAGCAGGAAGAGCAACAAAAUAUUGUGUGUGCAAAGCCCGAAAACCACUUUGGGCCCAACUUAUUUGUGGCUAACAAAUUUGCAUGCAUUGACGCAUCAUCAUCGC
((((((((((......(((.(....((((.......)))).).)))...(((((((......))))))).........))))))))........((.((((......))))))))..... ( -30.80)
>DroYak_CAF1 284155 120 - 1
GAAGCCACAAUUUUCAGCAGGAAGAGCAACAAAAUAUUGUGUGUGCAAAGCCCGAAAACCACUUUGGGCCCAACUUAUUUGUGGCUAACAAAUUUGCAUGCAUUGACGCAUCAUCAUCGC
((((((((((......(((.(....((((.......)))).).)))...(((((((......))))))).........))))))))........((.((((......))))))))..... ( -30.80)
>consensus
GAAGCCACAAUUUUCAGCAGGAAGAGCAACAAAAUAUUGUGUGUGCAAAGCCCGAAAACCACUUUGGGCCCAACUUAUUUGUGGCUAACAAAUUUGCAUGCAUUGACGCAUCAUCAUCGC
((((((((((......(((.(....((((.......)))).).)))...(((((((......))))))).........))))))))........((.((((......))))))))..... (-30.12 = -29.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:14 2006