Locus 1782

Sequence ID 3L_DroMel_CAF1
Location 5,066,663 – 5,066,783
Length 120
Max. P 0.877971
window2759

overview

Window 9

Location 5,066,663 – 5,066,783
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -27.14
Consensus MFE -27.16
Energy contribution -26.76
Covariance contribution -0.40
Combinations/Pair 1.06
Mean z-score -1.31
Structure conservation index 1.00
SVM decision value 0.90
SVM RNA-class probability 0.877971
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5066663 120 + 23771897
AUCCUGGCCAACAAAUUGACAUUUGAGCUGACACAUUGAGGACGCUUUUCCCAGCUCUUUACAACUUCUAUUGAUUUGCCCAAGAUUUGCAAUCGCAGUCAAAGUCUCCAGUGUUGUCCU
.....((.(((((....(((.(((((.(((.(....((((((.(((......)))))))))...........((((.((.........)))))))))))))))))).....))))).)). ( -26.70)
>DroSec_CAF1 273203 120 + 1
AUCCUGGCCAACAAAUUGACAUUUGAGCUGACACAUUGAGGACGCUUUUCCCAGCUCUUUACAACUUCUAUUGAUUUGCCCAAGACUUGCAAUCGCAGUCAAAGUCUCCAGUGUUGUCCU
.....((.(((((....(((....((((((.(.....).(((......)))))))))..........................((((.((....))))))...))).....))))).)). ( -27.10)
>DroSim_CAF1 294533 120 + 1
AUCCUGGCCAACAAAUUGACAUUUGUGCUGACACAUUGAGGACGCUUUUCCCAGCUCUUUACAACUUCUAUUGAUUUGCCCAAGAUUUGCAAUCGCAGUCAAAGUCUCCAGUGUUGUCCU
.....((.(((((....(((.((((.((((.(....((((((.(((......)))))))))...........((((.((.........)))))))))))))))))).....))))).)). ( -26.10)
>DroEre_CAF1 280089 120 + 1
AUCCCGGCCAACAAAUUGACAUUUGAGCUGACACAUUGAGGACGCUUUUCCCAGUUCUUUACAACUUCUAUUGAUUUGCCCAAGAUUUGCAAUCGCAGCCAAAGUCUCAAGUGUUGUCCU
.....((.(((((....(((.((((.((((.(..((((.(((......))))))).................((((.((.........)))))))))))))))))).....))))).)). ( -27.00)
>DroYak_CAF1 283922 120 + 1
AUCCUGGCCAACAAAUUGACAUUUGAGCUGACACAUUGAGGACGCUUUUCCCAGCUCUUUACAACUUCUAUUGAUUUGCCCAAGAUUUGCAAUCGCAGCCAAAGUCUCCAGUGUUGUCCU
.....((.(((((....(((.((((.((((.(....((((((.(((......)))))))))...........((((.((.........)))))))))))))))))).....))))).)). ( -28.80)
>consensus
AUCCUGGCCAACAAAUUGACAUUUGAGCUGACACAUUGAGGACGCUUUUCCCAGCUCUUUACAACUUCUAUUGAUUUGCCCAAGAUUUGCAAUCGCAGUCAAAGUCUCCAGUGUUGUCCU
.....((.(((((....(((.((((.((((.(....((((((.(((......)))))))))...........((((.((.........)))))))))))))))))).....))))).)). (-27.16 = -26.76 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:13 2006