Locus 1781

Sequence ID 3L_DroMel_CAF1
Location 5,066,047 – 5,066,167
Length 120
Max. P 0.623856
window2758

overview

Window 8

Location 5,066,047 – 5,066,167
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.19
Mean single sequence MFE -25.63
Consensus MFE -19.24
Energy contribution -19.64
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.75
SVM decision value 0.18
SVM RNA-class probability 0.623856
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5066047 120 - 23771897
UUUUUUACGAGGGUUCCGGUGUUACAUUGAACCAAAAGUGUUGCCUCAUUAGGCCACUUCUCACACACGUUGAAAAACCCUGGCAAACGCACACACACACACACACAAUCCCUCUUAUCC
........(((((.....((((.............(((((..((((....))))))))).........(((....)))....((....))..........)))).....)))))...... ( -23.40)
>DroSec_CAF1 272590 118 - 1
UUUUUUACGAGGGUUCCGGUGCUACAGCGAACCAAAAGUGUUGCCUCAUUAGGCCACUUCUCACACACGUUGAAAAACCCUGGCAAACGCGCACACA--CACACACAAUCCCUCUUAUCC
........(((((.....((((..(((((......(((((..((((....)))))))))........)))))..........((....))))))...--..........)))))...... ( -26.21)
>DroSim_CAF1 293920 118 - 1
UUUUUUACGAGGGUUCCGGUGCUACAACGAACCAAAAGUGUUGCCUCAUUAGGCCACUUCUCACACACGUUGAAAAACCCUGGCAAACGCACACACA--CACACACAAUCCCUCUUAUCC
........(((((.....(((...(((((......(((((..((((....)))))))))........)))))..........((....)).......--..))).....)))))...... ( -25.84)
>DroEre_CAF1 279507 110 - 1
UUUUUUACGAGGGUUCCGGUUGUACAUUGAACCAGAAGUGUUGCCUCAUUAGGCCACUUCUCAUGCACGUUGAAAAACCCUGCCAAACGCACAC----------ACAAUCCCUCUUAUCC
........(((((.....(((((...(((....(((((((..((((....)))))))))))...(((.(((....)))..))))))..))).))----------.....)))))...... ( -27.40)
>DroYak_CAF1 283319 112 - 1
UUUUUUACGAGGGUUUCGGUGGUACAUUGAACCAAAAGGGUUGCCUCAUUAGGCCACUUCUCAUGCACGUUGAAAAAGCCUGGCAAACGCACAC--------AGACAAUCCCUCUUAUCC
........(((((..((.(((((........((....)).(((((.....((((...(((...........)))...)))))))))..)).)))--------.))....)))))...... ( -25.30)
>consensus
UUUUUUACGAGGGUUCCGGUGCUACAUUGAACCAAAAGUGUUGCCUCAUUAGGCCACUUCUCACACACGUUGAAAAACCCUGGCAAACGCACACACA__CACACACAAUCCCUCUUAUCC
........(((((....(((..........)))....(((((((((....))))..............(((....))).......)))))...................)))))...... (-19.24 = -19.64 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:12 2006