Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,065,583 – 5,065,702 |
Length | 119 |
Max. P | 0.843520 |
Location | 5,065,583 – 5,065,702 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.73 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -22.72 |
Energy contribution | -22.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.22 |
Structure conservation index | 0.99 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5065583 119 + 23771897 UCUCUGGCGAUAAAUCAAGCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A ((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90) >DroSec_CAF1 272126 119 + 1 UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A ((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90) >DroSim_CAF1 293457 119 + 1 UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA-A ((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -23.90) >DroEre_CAF1 279048 119 + 1 UCUCUGGCGAUAAAUCAGCCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAAGCGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGGAAGGGG-A ((((((.((.....................((((................))))...(((((....(((.....)))((((......)))).))))))))))))).((......))..-. ( -24.19) >DroYak_CAF1 282841 120 + 1 UCACUGGCGAUAAAUCAAGCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGUAAGGGGAA ((.(((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).)))))))))).)).((......)).... ( -19.00) >consensus UCUCUGGCGAUAAAUCAACCGAAUAAAAAAGCGCAAAAUAUGUGAAAUAUGUGCAAAUGUCAGCUUUUCAAUCCGAAUCAAUAAACUUUGAAUGACACGCAGAGAACCGAGAAAGGGA_A ((((((.((.....................(((((...(((.....))))))))...(((((....(((.....)))((((......)))).))))))))))))).((......)).... (-22.72 = -22.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:09 2006