Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,065,330 – 5,065,425 |
Length | 95 |
Max. P | 0.985733 |
Location | 5,065,330 – 5,065,425 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -15.65 |
Energy contribution | -16.02 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.13 |
Mean z-score | -2.62 |
Structure conservation index | 0.63 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5065330 95 + 23771897 GUUCCCUUUGACAGAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCGUGGAGUACUGAAAAAGUGUUAGAGAA-AAA--AAA----------------------CAG (((((((((.((.....)).)))))))))((((..(((((.(((........))).)))))....)))).................-...--...----------------------... ( -18.00) >DroSec_CAF1 271863 118 + 1 GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGCAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAAAAAA--CUACGGAAAAGGUAGGCAGAUAUUUCAG (((((((((.((.....)).)))))))))..(((((((((........((((((..((((.(.....)))))....))))))........--((((.......))))))...))))))). ( -26.70) >DroSim_CAF1 293195 117 + 1 GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAA-AAA--CUACGGAAAAGGUAGGCAGAUAUUUCAG (((((((((.((.....)).)))))))))..(((((((..........((((((..((((.(.....)))))....))))))....-...--((((.......)))).....))))))). ( -25.90) >DroEre_CAF1 278789 109 + 1 GCUCCCUUUGACAAAACGCAAAGCGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUGGUGGAACACUGAAAAAGUGUUCGAUUA-AAACAGUACGGAAAAAGUAGGCU---------- ((((((((((........))))).))))).((((.......))))...........(((((.(((((((.....))))))).))))-).....(((.......)))....---------- ( -28.20) >consensus GUUCCCUUUGACAUAACGUAAAGGGGAGCAGUGAAAUGGAAUUACAAAUUAAUAAGUUCAUGGAGUACUGAAAAAGUGUUAGAGAA_AAA__CUACGGAAAAGGUAGGCA_______CAG (((((((((.((.....)).)))))))))((((..(((((.(((........))).)))))....))))................................................... (-15.65 = -16.02 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:08 2006