Locus 1774

Sequence ID 3L_DroMel_CAF1
Location 5,063,333 – 5,063,452
Length 119
Max. P 0.781656
window2748

overview

Window 8

Location 5,063,333 – 5,063,452
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.01
Mean single sequence MFE -30.26
Consensus MFE -19.18
Energy contribution -19.26
Covariance contribution 0.08
Combinations/Pair 1.22
Mean z-score -2.58
Structure conservation index 0.63
SVM decision value 0.56
SVM RNA-class probability 0.781656
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5063333 119 + 23771897
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCGGCGAUAGUCAGUGUUGCCAA-CACCUAGAUAAGCUUAUCUAAAAUAGCUAAAAUUGGGGUUCUAUUAAAA
(.((((......(((....)))...(((((((((((((((((((((((.(((((((.....)))))))..-..))))))..)).))))......))))).)))))))))).)........ ( -25.90)
>DroSec_CAF1 269841 119 + 1
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCAGCAUUAGUCAGAGUUGCCAA-CACCUAGAUAAGCUUAUCUAAAAUAGCUGAAAUUGGGGAUAUAUUAAAA
.................((..((((...((((((((..........((((((..........))))))..-....((((((....))))))...)))))))).))))..))......... ( -27.50)
>DroSim_CAF1 291139 119 + 1
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCGGCAAUAGUCAGUGCUGCCAA-CACCUAGAUAAGCUUAUCUUAUAUAGCUAAAAUUGGGAAUCUUUUAAAA
............((((.((((((((...((((((((..........(((((((........)))))))..-.....(((((....)))))....)))))))).)))))))).)))).... ( -30.60)
>DroEre_CAF1 276698 120 + 1
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCGGCAGGAGUCAGUGUUGCCAAGCACCCAUAUAAGCUUCCCUUAAAUAGCUAAAAUAGGCGACUUAGUAAAA
......(((((((((....)))......((((((((.((((((((.......))))))))(((((....)))))....................))))))))...))))))......... ( -32.80)
>DroYak_CAF1 280469 109 + 1
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCGGUAGAAGUCAGUGUUGCC-----------UAAGCGCAACUUAAAUAGCUAAAAUGGGGGAUUUUUAAGAA
.......((....((((((..((..((.((((((((.(((((((((.....)))))))))..(((((.-----------.....))))).....)))))))).))))..))))))..)). ( -34.50)
>consensus
GCACCUGUCGCCGAAAAAUUUCCAACAAUUUAGCUAAUGACUUCUAGGCGGCAAUAGUCAGUGUUGCCAA_CACCUAGAUAAGCUUAUCUUAAAUAGCUAAAAUUGGGGAUCUAUUAAAA
......(((.(((((....)))......((((((((..........(((((((........)))))))...........((((.....))))..))))))))...)).)))......... (-19.18 = -19.26 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:01 2006