Locus 1772

Sequence ID 3L_DroMel_CAF1
Location 5,061,697 – 5,061,799
Length 102
Max. P 0.997072
window2743

overview

Window 3

Location 5,061,697 – 5,061,799
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 93.73
Mean single sequence MFE -30.50
Consensus MFE -25.76
Energy contribution -26.16
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.84
SVM decision value 2.79
SVM RNA-class probability 0.997072
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5061697 102 + 23771897
CAACAUUUGCAAACAGCAAACGGAUGGGCAACCAUCUGCCAACACCAACGCCAUGGGCUUUAUCCAUGUGAUGCCCCUUGUGCUUGCACUGAAAAAAUCUGG
.......(((((........(((((((....)))))))...........((((.((((.((((....)))).))))..)).))))))).............. ( -28.50)
>DroSec_CAF1 268130 102 + 1
CAACAUUUGCAAACAACAAACGGAUGGGCAACCAUCUGCCAACACCAACGCCAUGGGCAUUAUCCAUGUGAUGCCCCUUGUGCCUGCACUGAAAAAAUCUGG
.......((((.........(((((((....)))))))...........((((.(((((((((....)))))))))..)).)).)))).............. ( -31.50)
>DroSim_CAF1 289439 102 + 1
CAACAUUUGCAAACAGCAAACGGAUGGGCAACCAUCUGCCAACACCAACGCCAUGGGCUUUAUCCAUGUGAUGCCCCUUGUGCCUGCACUGAAAAAAUCUGG
.....(((((.....)))))(((((((....)))))))......(((.......((((.((((....)))).))))...(((....)))..........))) ( -27.90)
>DroEre_CAF1 274961 102 + 1
CAACAUUUGCAAACAGCAAACGGAUGGGCAACCAUCUGCCAACACCAACGCCAUGGGCUUUAUCCAUGUGAUGCCCCUUGCGCGCACACUGCAAGCAGCUGG
...((.((((.....((...(((((((....)))))))...........((...((((.((((....)))).))))...))))((.....))..)))).)). ( -32.90)
>DroYak_CAF1 278701 102 + 1
CAACAUUUGCAAACAGCAAACGGAUGGGCAACCAUCUGUCAACACCAACGCCAUGGGCUAUAUCCAUGUGAUGCCCCUUGUGCCCACACUGGUAAAAGCUGG
.............((((..((((((((....))))))))....((((.(((.(((((.....)))))))).........(((....)))))))....)))). ( -31.70)
>consensus
CAACAUUUGCAAACAGCAAACGGAUGGGCAACCAUCUGCCAACACCAACGCCAUGGGCUUUAUCCAUGUGAUGCCCCUUGUGCCUGCACUGAAAAAAUCUGG
.....(((((.....)))))(((((((....)))))))...........((((.((((.((((....)))).))))..)).))................... (-25.76 = -26.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:56 2006