Locus 1770

Sequence ID 3L_DroMel_CAF1
Location 5,060,095 – 5,060,192
Length 97
Max. P 0.506087
window2740

overview

Window 0

Location 5,060,095 – 5,060,192
Length 97
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.12
Mean single sequence MFE -32.51
Consensus MFE -25.86
Energy contribution -26.10
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.36
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.506087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5060095 97 + 23771897
ACGUCGGGGAAAGCGCAACUAGUUUG--CCACACUGGAACGGAAAAGCUAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCUCGUCUCGGUACCGCC------
.((.((((((((((((..((((..((--((((((....................))))))))))))..)))))......)))))))...))........------ ( -32.95)
>DroSec_CAF1 266528 97 + 1
ACGUCGGGGAAAGCGCAACUAGUUUG--CCACACUGGAACGGAAAAGCUAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCUCGUCUCGGUACCGCC------
.((.((((((((((((..((((..((--((((((....................))))))))))))..)))))......)))))))...))........------ ( -32.95)
>DroSim_CAF1 287830 97 + 1
ACGUCGGGGAAAGCGCAACUAGUUUG--CCACACUGGAACGGAAAAGCUAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCUCGUCUCGGUACCGCC------
.((.((((((((((((..((((..((--((((((....................))))))))))))..)))))......)))))))...))........------ ( -32.95)
>DroEre_CAF1 273337 97 + 1
CCGUCGAGGAAAGCGCAACUAGUUUG--CCACACUGGAAUGGAAAAGCCAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCGCGUCGUGGUACCGCC------
..(.((.(((((((((..((((..((--((((((.....(((.....)))....))))))))))))..)))))......)))).)).)(((....))).------ ( -35.00)
>DroYak_CAF1 277026 105 + 1
GCGUCGGGGAAAGCGCAACUAGUUUGCGCCACUCUGCAAUGGAAAAGCUAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCUCGUCUCACCACCCCCCCACCC
(.(.((((((((((((((.....))))(((((.(.....(((.....)))....).)))))....(((....))).)))))))))).).)............... ( -28.70)
>consensus
ACGUCGGGGAAAGCGCAACUAGUUUG__CCACACUGGAACGGAAAAGCUAAAAUGUGUGGCAUUGGAAGCGCUUCAGUUUUCCUCGUCUCGGUACCGCC______
..(.((((((((((((..(((((.....((((((......((.....)).....)))))).)))))..)))))......))))))).)................. (-25.86 = -26.10 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:53 2006