Locus 177

Sequence ID 3L_DroMel_CAF1
Location 531,876 – 531,988
Length 112
Max. P 0.771028
window255

overview

Window 5

Location 531,876 – 531,988
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.14
Mean single sequence MFE -31.53
Consensus MFE -22.37
Energy contribution -22.73
Covariance contribution 0.36
Combinations/Pair 1.24
Mean z-score -2.03
Structure conservation index 0.71
SVM decision value 0.53
SVM RNA-class probability 0.771028
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 531876 112 + 23771897
GUGAUAGCACUCAUCGAUUAUUGUGACAAUCGCUUAAUUUGCUUGAGUUAUC------GUUAUCACACACGCGCCGUG--GGCAAAUGCGCCCUGUUGUUUAGUAAUACUAGGCGCAAUA
(((((((((((((..(((((..(((.....))).)))))....)))))....------))))))))....(((((..(--(((......)))).......(((.....)))))))).... ( -37.20)
>DroSec_CAF1 6053 112 + 1
GUAAUAGCACUCAUCGAUUAUUGUGACAAUCGCUUGAUUUGCUUGAGUUAUC------GUUAUCACACACGCGCCGUG--GGCAAAUGCGCCCUGUUGUUUAGUAAUACUAGGCGCAAUA
((.((((((((((..(((((..(((.....))).)))))....)))))....------))))).))....(((((..(--(((......)))).......(((.....)))))))).... ( -31.10)
>DroSim_CAF1 6928 111 + 1
GUGAUAGCACUCAUCGAUUAUUGUGACAAUCGCUUGAUUUGCUUGAGUUAUC------GUUAUCACACACGCGCCGUG--GGCA-AUGCGCCCUGUUGUUUAGUAAUACUAGGCGCAAUA
(((((((((((((..(((((..(((.....))).)))))....)))))....------))))))))....(((((..(--(((.-....)))).......(((.....)))))))).... ( -37.10)
>DroEre_CAF1 6289 100 + 1
GUGAUAGCACUCAUCGAUUAUUGUGACAAUCGCUCGAUUUGCUUGAGUUAUC------GUUAUCACACACGCGCCCUG--------------UUGUUGUUUAGUAAUACUAGGCGCAAUA
(((((((((((((.(((.....(((.....))).....)))..)))))....------))))))))....(((((..(--------------(.((((.....))))))..))))).... ( -29.50)
>DroYak_CAF1 6482 97 + 1
GUGAUAGCACUCAUCGAUUAUUGUGACAAUCGCUUGAUUUGCUCGAGUUAUC------GUUAUCACACACGCGCCCCG--------------U---UGUUUGGUAAUACUAGGCGCAAUA
((((((((.......((((........))))((((((.....))))))....------))))))))....(((((..(--------------(---.(((....)))))..))))).... ( -26.90)
>DroAna_CAF1 9309 117 + 1
GUGAUUACAAAUAUCGAUUGCAGUGACAAUCGCUCGGUCUUCUUGAGUUAUCGUUAUCGUUAUCAGACACGCGCUGGGCUGGCAAAUAAA--AUGUUGU-UAUUAUUGCUAGGCGCAAUA
..(((.......)))(((.((.(((((.((.((((((.....)))))).)).))))).)).)))......(((((.(((((((((.....--...))))-)).....))).))))).... ( -27.40)
>consensus
GUGAUAGCACUCAUCGAUUAUUGUGACAAUCGCUUGAUUUGCUUGAGUUAUC______GUUAUCACACACGCGCCGUG__GGCA_AUGCG__CUGUUGUUUAGUAAUACUAGGCGCAAUA
((((((((.......((((........))))((((((.....))))))..........))))))))....(((((.....(((......)))........(((.....)))))))).... (-22.37 = -22.73 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:51 2006