Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,058,136 – 5,058,256 |
Length | 120 |
Max. P | 0.500000 |
Location | 5,058,136 – 5,058,256 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -27.02 |
Consensus MFE | -25.22 |
Energy contribution | -25.22 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.23 |
Structure conservation index | 0.93 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5058136 120 - 23771897 AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA (((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60) >DroSec_CAF1 264588 120 - 1 AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA (((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60) >DroSim_CAF1 285925 120 - 1 AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA (((((((((.(((...(((.......))).....((((((............))))))..)))...))))))))).......((((...(((((((.........)))))))...)))). ( -26.60) >DroEre_CAF1 271358 120 - 1 AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCACAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCCUAUCGAAUGGCAAUUA (((((((((.((....(((.......)))........((((((.(((.....)))))))))))...)))))))))..........................(((........)))..... ( -27.50) >DroYak_CAF1 275025 120 - 1 AUGUUUCUUGGCCAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAUGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA ..........(((((.(((.......)))...((((((((...((....)).)))))).((((..(((((......((((((....))))))...))))).))))...)))))))..... ( -27.80) >consensus AUGUUUCUUGGCAAUAUGCAAAUCAGGCAAUUUCGCAGCUGCAAGUUAUCAAGGCUGCAGUGCACAGAGAAACAUUAAUUUGAAUUUAAAUUUGAUCUCUCGCAUAUCGAAUGGCAAUUA (((((((((.((....(((.......)))........((((((.(((.....)))))))))))...))))))))).......((((...(((((((.........)))))))...)))). (-25.22 = -25.22 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006