Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,057,857 – 5,057,963 |
Length | 106 |
Max. P | 0.511016 |
Location | 5,057,857 – 5,057,963 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 92.16 |
Mean single sequence MFE | -19.76 |
Consensus MFE | -14.98 |
Energy contribution | -15.38 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.76 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5057857 106 - 23771897 ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUUCUGCAUAAGUAUAUCCAAACAUUCGGACAGAUAU------GCAUGGGCAAAAAUGCAGGGACGGUAAAAAUGC ...............................(((..(..((((((.......(((........)))......(------((....)))...))))))..)..)))....... ( -16.40) >DroSec_CAF1 264310 106 - 1 ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAU------GCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC ...............................(((..(((((((((.......((((......))))......(------((....)))...)))))))))..)))....... ( -21.60) >DroSim_CAF1 285642 112 - 1 ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAUGCAUAUGCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC ...............................(((..(((((((((..(((((((((......))))....)))))...(((....)))...)))))))))..)))....... ( -24.50) >DroEre_CAF1 271084 105 - 1 ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUUCUGCAUAAGUAUUUCCGUAUAUCCG-ACAGAUAU------GCAUUGGCUAAAAUGCAGGGACGGUAAAAAUGC ...............................(((..(..((((((.(((......(((((((..-...)))))------))....)))...))))))..)..)))....... ( -18.90) >DroYak_CAF1 274741 106 - 1 ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUUUCCGUUUAUCCAAACAGAUAU------GCAUUGGCUAAAAUGCAGGGGCGGUAAAAAUGC ...............................(((..(((((((((..((((.((.((((....)))).)).))------)).((.....)))))))))))..)))....... ( -17.40) >consensus ACAAACAAAUAUUUAUCUAAGCAAACUCAUAUACAUUUCCUGCAUAAGUAUAUCCGAACAUCCGGACAGAUAU______GCAUUGGCAAAAAUGCAGGGACGGUAAAAAUGC ...............................(((..(((((((((..((((.((((......))))...))))......((....))....)))))))))..)))....... (-14.98 = -15.38 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:51 2006