Locus 1766

Sequence ID 3L_DroMel_CAF1
Location 5,057,438 – 5,057,538
Length 100
Max. P 0.811541
window2730

overview

Window 0

Location 5,057,438 – 5,057,538
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.18
Mean single sequence MFE -26.43
Consensus MFE -10.25
Energy contribution -10.61
Covariance contribution 0.36
Combinations/Pair 1.22
Mean z-score -2.50
Structure conservation index 0.39
SVM decision value 0.65
SVM RNA-class probability 0.811541
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5057438 100 + 23771897
GGGCUUAAAACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUGUGCA-AC-----------------AUGUGGUAAGCGAAU--UGCAUGUG
...........(((.......((((((((((.(((((..(((.....)))..))))).))))))))))...))).-((-----------------(((..((......))--..))))). ( -21.50)
>DroPse_CAF1 332180 120 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUUGUUGUCAACGUUAAUUGAGAAUAAUUAUAUUUAAUUGCAUGGCUGCAAGAGCAUGCAGCCGGUAUGCGGCAGCCAAAUGUGGCAUGUG
............................(((((((.((((......)))).)))))))........(..(((((((((....((((((.....)))))).)))))))..))..)...... ( -30.60)
>DroSec_CAF1 263891 100 + 1
GGGCUUAAAACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUGUGCC-AC-----------------AUGUGGUAAGCGAAU--UGCAUGUG
...........(((((((...((((((((((.(((((..(((.....)))..))))).))))))))))((.((((-(.-----------------...))))).))))))--)))..... ( -26.80)
>DroSim_CAF1 285224 99 + 1
GGGCUUA-AACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUGUGCC-AC-----------------AUGUGGUAAGCGAAU--UGCAUGUG
.......-...(((((((...((((((((((.(((((..(((.....)))..))))).))))))))))((.((((-(.-----------------...))))).))))))--)))..... ( -26.80)
>DroEre_CAF1 270677 95 + 1
-----UAAAACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUAUGCC-GC-----------------GUGUGGUAAGCGAAU--UGCAUGUG
-----......(((((((...((((((((((.(((((..(((.....)))..))))).))))))))))((.((((-(.-----------------...))))).))))))--)))..... ( -26.10)
>DroYak_CAF1 274327 102 + 1
GGGCUUAAAACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUAAGCC-GCAU---------------GUGUGGUAAGCGAAU--UGCAUGUG
...........(((((((...((((((((((.(((((..(((.....)))..))))).))))))))))((..(((-((..---------------..)))))..))))))--)))..... ( -26.80)
>consensus
GGGCUUAAAACGCAAUUCUCAAAUUGAAAAUUGUUGUCAUCGUAAAUUGGGAAUAAUUAUUUUUAAUUGUAUGCC_AC_________________AUGUGGUAAGCGAAU__UGCAUGUG
...........(((..............(((((((.(((........))).)))))))........((((.((((.((...................)))))).))))....)))..... (-10.25 = -10.61 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:44 2006