| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,054,275 – 5,054,388 |
| Length | 113 |
| Max. P | 0.663455 |
| Location | 5,054,275 – 5,054,388 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -23.66 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5054275 113 + 23771897 UUUUGGCCUUUUUUUUAUUUAUAUCAGUAGCUAAGUACUUAGCUCGCUGGAGAUGAGGAAAAAUUGCAUUCGCCAUUUAGGAGGUGAGGGUAUAAUGAAAAGUGUCAAGGCCC ....((((((((((((((((...(((((((((((....)))))).)))))))))))))))))..(((.((((((........)))))).)))................)))). ( -33.80) >DroSec_CAF1 260748 112 + 1 UUUUGGCCUUC-CUUUAUUUAUAUCAGCAGCUAAGUACUUGGCUCGCCGGAGAUGAGGAAAAAUUGCAUUCGCCAUUUAGGAGGUGAGGGUAUAAUGAAAAGUGUCAAGGCCC ....(((((((-((((..(((((((.((((((((....)))))...((........))......))).((((((........)))))))))))))...)))).)..)))))). ( -31.10) >DroSim_CAF1 282056 112 + 1 UUUUGGCCUUG-CUUUAUUUAUAUCAGCAGCUAAGUACUUGGCUCGCUGGAGAUGAGGAAAAAUUGCAUUCGCCAUUUAGGAGGUGAGGGUAUAAUGAAAAGUGUCAAGGCCC ....(((((((-((((((((...(((((((((((....)))))).)))))))))))))......(((.((((((........)))))).))).............))))))). ( -38.20) >DroEre_CAF1 267579 105 + 1 GUUUGUCCUU--UUUCAUUUAUGUCAGUAGCU----ACUUAGCUCGCAGG-GCUGUGGA-AAAUUGCAUCCGCCAUUUAGGAGGUGAGGGUAUAAUGAAAAGUGUCAAGGCCC .((((.(.((--(((((((.((..(..((.((----.(((((((.....)-)).(((((-........)))))....)))))).))..)..))))))))))).).)))).... ( -25.20) >DroYak_CAF1 271122 108 + 1 AUUUGGCCUUC-UUUUAUUUAUAUCAGUAGCU----ACUUAGCUCGCAGGAGCGGCGGAAAAAUUGCAUUCGCCAUUUAGGAGGUGAUGGUAUAAUGAAAAGUGUCAAGGCCC ....(((((((-((((..((((((((...(((----.((((((((....))))((((((.........))))))...)))).)))..))))))))..)))))....)))))). ( -37.20) >consensus UUUUGGCCUUC_UUUUAUUUAUAUCAGUAGCUAAGUACUUAGCUCGCAGGAGAUGAGGAAAAAUUGCAUUCGCCAUUUAGGAGGUGAGGGUAUAAUGAAAAGUGUCAAGGCCC ....((((((..((((..(((((((.((((((((....)))))).)).....................((((((........)))))))))))))...))))....)))))). (-23.66 = -24.38 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:36 2006