Locus 1760

Sequence ID	3L_DroMel_CAF1
Location	5,051,397 – 5,051,490
Length	93
Max. P	0.705323

overview

Window 9

Location	5,051,397 – 5,051,490
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	96.77
Mean single sequence MFE	-24.00
Consensus MFE	-21.62
Energy contribution	-21.66
Covariance contribution	0.04
Combinations/Pair	1.11
Mean z-score	-1.31
Structure conservation index	0.90
SVM decision value	0.36
SVM RNA-class probability	0.705323
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5051397 93 + 23771897
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUGGAAACGCUUCUUUUCGGCUCUCGAAAUGAAUUCCAUGCGAACGG
.....................(((((((.((..(((((.(((.((((((((((......)))))))))).)))..)))))..)).))))))). ( -24.90)
>DroSec_CAF1 257888 93 + 1
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUGGAAACGCUUCUUUUCGGCUCUCGAAAUGAAUGCCAUGCGAACGG
.....................(((((((.((.((((((.(((.((((((((((......)))))))))).)))..)))))).)).))))))). ( -28.50)
>DroSim_CAF1 279195 93 + 1
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUGGAAACGCUUCUUUUCGGCUCUCGAAAUGAAUGCCAUGCGAACGG
.....................(((((((.((.((((((.(((.((((((((((......)))))))))).)))..)))))).)).))))))). ( -28.50)
>DroEre_CAF1 264599 93 + 1
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUGAAAACGCUUCUUUUCGACUCUCGAAAUGAAUUCCAUGCAAACGG
.....................(((((((.((..(((((.(((.(((.((((((......)))))).))).)))..)))))..)).))))))). ( -19.10)
>DroYak_CAF1 267798 93 + 1
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUAAAAACGCUUCUUUUCGACUCUCGAAAUGAAUUCCAUGCGAAUGG
........((((((........))))))...(((((((...(((.........)))(((.(((((.....))))).))).......))))))) ( -19.00)
>consensus
AAAUAUGUACAAAUUGCCCAAUGUUUGUUUGCCAUUCGGUUGCGAGCUGGAAACGCUUCUUUUCGGCUCUCGAAAUGAAUUCCAUGCGAACGG
.....................(((((((.((..(((((.(((.((((((((((......)))))))))).)))..)))))..)).))))))). (-21.62 = -21.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:33 2006