Locus 1759

Sequence ID 3L_DroMel_CAF1
Location 5,051,151 – 5,051,246
Length 95
Max. P 0.944845
window2718

overview

Window 8

Location 5,051,151 – 5,051,246
Length 95
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 97.52
Mean single sequence MFE -27.00
Consensus MFE -27.02
Energy contribution -26.86
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 1.00
SVM decision value 1.35
SVM RNA-class probability 0.944845
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5051151 95 + 23771897
----UGCCGUUGUUAUUGCUACAAUGUUCGUCGUGGUGCAUUUUCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
----..((((((...(((.(((((.((.(((((..(.((((...............)))).)..))))).))..)))))..)))....))))))..... ( -26.86)
>DroSec_CAF1 257641 95 + 1
----UGCCGUUGUUAUUGCUGCAAUGUUCGUCGUGGUGCAUUUUCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
----..((((((...(((.(((((.((.(((((..(.((((...............)))).)..))))).))..)))))..)))....))))))..... ( -26.86)
>DroSim_CAF1 278949 94 + 1
----UGCCGUUGUUAUUGCUGCAAUGUUCGUCGUGGUGCAUU-UCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
----..((((((...(((.(((((.((.(((((..(.((((.-.............)))).)..))))).))..)))))..)))....))))))..... ( -26.94)
>DroEre_CAF1 264370 95 + 1
----UGCCGUUGUUAUUGCUGCAAUGUUCGUCGUGGUGCAUUUUCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
----..((((((...(((.(((((.((.(((((..(.((((...............)))).)..))))).))..)))))..)))....))))))..... ( -26.86)
>DroYak_CAF1 267551 99 + 1
UUGUUGCCGUUGUUAUUGCUGCAAUGUUCGUCGUGGUGCAUUUUCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
...(((((((((((.....(((((.((.(((((..(.((((...............)))).)..))))).))..))))))))))....))))))..... ( -27.46)
>consensus
____UGCCGUUGUUAUUGCUGCAAUGUUCGUCGUGGUGCAUUUUCAAUUUGUUUUCGUGCUCUGCGGCGUGCUCUUGUAAACAAAAUCCGGCGGAAAAU
......((((((...(((.(((((.((.(((((..(.((((...............)))).)..))))).))..)))))..)))....))))))..... (-27.02 = -26.86 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:32 2006