Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,050,459 – 5,050,611 |
Length | 152 |
Max. P | 0.996313 |
Location | 5,050,459 – 5,050,571 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 92.64 |
Mean single sequence MFE | -39.54 |
Consensus MFE | -33.78 |
Energy contribution | -35.66 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.29 |
Structure conservation index | 0.85 |
SVM decision value | 2.68 |
SVM RNA-class probability | 0.996313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5050459 112 + 23771897 --UGGCCAUGGCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUGCUAGCUGGAAAAGUUUCAAUAGCCAAAUGCCUAUUGACGUCGCAGAAGAAGUUACCCUAAAGCGAACCGA --..((((((....)))))).((((((....)))))).((((((((....((.......(((((((.(....).)))))))..((......))......))...)))))))).. ( -41.90) >DroSec_CAF1 256878 112 + 1 --UGGCCAUGGCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUGCUAGCUGGAAAAGUUUCAAUAGCCAAAUGCCUAUUGACGGCGCAGAAGAAGUGACCCGAAAGCGAACCGA --..((((((....)))))).((((((....)))))).((((((((((((.....))))(((((((.(....).)))))))((((((.......)))..)))..)))))))).. ( -45.10) >DroSim_CAF1 278187 112 + 1 --UGGCCAUGGCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUGCUAGCUGGAAAAGUUUCAAUAGCCAAAUGCCUAUUGACGGCGCAGAAGAAGUGACCCGAAAGCGAACCGA --..((((((....)))))).((((((....)))))).((((((((((((.....))))(((((((.(....).)))))))((((((.......)))..)))..)))))))).. ( -45.10) >DroEre_CAF1 263600 104 + 1 ----------GCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUCCUAGCUGGAAAAGUUUCAAUAGCCAAAUGUCUAUUGACGGCGCAGAAGAAGUGACCCGAAAGCGGGCCGA ----------......((((.((((....))))((((.(.(((((.....)))))....(((((((.(....).)))))))).))))...........(((....).)))))). ( -32.90) >DroYak_CAF1 266792 114 + 1 CAUGGCCAUAGCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUCCUAGCUGCAAAAGUUUCAAUAGCCAAAUGUCUAUUGACGGCGCAAAAGAAGUGACCCGAAAGCGAACCGA ....(((((......))))).((((((....)))))).(((((.((((((.....))))(((((((.(....).)))))))((((((.......)))..)))..)).))))).. ( -32.70) >consensus __UGGCCAUGGCAACAUGGCAGCACGUGUGUGCGUGCGGGUUUGCUAGCUGGAAAAGUUUCAAUAGCCAAAUGCCUAUUGACGGCGCAGAAGAAGUGACCCGAAAGCGAACCGA ....((((((....)))))).((((((....)))))).((((((((((((.....))))(((((((.(....).))))))).(((((.......))).))....)))))))).. (-33.78 = -35.66 + 1.88)
Location | 5,050,495 – 5,050,611 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 95.86 |
Mean single sequence MFE | -26.04 |
Consensus MFE | -23.37 |
Energy contribution | -23.17 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.28 |
Structure conservation index | 0.90 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5050495 116 - 23771897 UGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGUUCGCUUUAGGGUAACUUCUUCUGCGACGUCAAUAGGCAUUUGGCUAUUGAAACUUUUCCAGCUAGCAAACC .................((.(((.(((........(((....((....))...)))..........)))....(((((((.(....).)))))))..........))).))..... ( -21.97) >DroSec_CAF1 256914 116 - 1 CGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGUUCGCUUUCGGGUCACUUCUUCUGCGCCGUCAAUAGGCAUUUGGCUAUUGAAACUUUUCCAGCUAGCAAACC .(((......((((..(((((((((..........((((...((....))..)))).........))))(((.......)))...)))))...)))).......)))......... ( -27.23) >DroSim_CAF1 278223 116 - 1 CGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGUUCGCUUUCGGGUCACUUCUUCUGCGCCGUCAAUAGGCAUUUGGCUAUUGAAACUUUUCCAGCUAGCAAACC .(((......((((..(((((((((..........((((...((....))..)))).........))))(((.......)))...)))))...)))).......)))......... ( -27.23) >DroEre_CAF1 263628 116 - 1 UGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGCCCGCUUUCGGGUCACUUCUUCUGCGCCGUCAAUAGACAUUUGGCUAUUGAAACUUUUCCAGCUAGGAAACC ..........(((((.(((..((((..........((((...((....))..)))).........))))....(((((((.(....).)))))))..........))).))))).. ( -26.81) >DroYak_CAF1 266830 116 - 1 AGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGUUCGCUUUCGGGUCACUUCUUUUGCGCCGUCAAUAGACAUUUGGCUAUUGAAACUUUUGCAGCUAGGAAACC ..........(((((.(((..((((((........((((...((....))..))))..........)))....(((((((.(....).)))))))......))).))).))))).. ( -26.97) >consensus CGCUUUUCCUUUUCCCAGCCAGCAGCAUCUCAUUUCCCGUUCGGUUCGCUUUCGGGUCACUUCUUCUGCGCCGUCAAUAGGCAUUUGGCUAUUGAAACUUUUCCAGCUAGCAAACC .(((......((((..(((((((((..........((((...((....))..)))).........))))...(((....)))...)))))...)))).......)))......... (-23.37 = -23.17 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:31 2006