Locus 1757

Sequence ID 3L_DroMel_CAF1
Location 5,048,071 – 5,048,179
Length 108
Max. P 0.627594
window2715

overview

Window 5

Location 5,048,071 – 5,048,179
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 96.13
Mean single sequence MFE -23.56
Consensus MFE -18.44
Energy contribution -18.84
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.78
SVM decision value 0.19
SVM RNA-class probability 0.627594
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5048071 108 + 23771897
AA-AGAACGCAAAAAGAAGCAAUACAAACACAAAAAACUUUGAGCCACCUUCUGUCAUGUGAGUGUAUGUGUGCGUGAGCGAUAAACAAGCCACAUGUACAGCACACAC
..-.....((....(((((.....((((..........))))......)))))((((((((.((...(((.(((....)))....))).)))))))).)).))...... ( -22.50)
>DroSec_CAF1 254541 108 + 1
AA-AGAACGCAAAAAGAAGCAAUACAAACACAAAAAACUUUGAGCCACCUUCUGUCAUGCGACUGUAUGUGUGCGUGUGCGAUAAACAAGCCACAUGUACAGCACACAC
..-....((((...(((((.....((((..........))))......)))))....)))).((((((((((((.(((.......))).).)))))))))))....... ( -24.30)
>DroSim_CAF1 275840 108 + 1
AA-AGAACGCAAAAAGAAGCAAUACAAACACAAAAAACUUUGAGCCACCUUGUGUCAUGUGACUGUAUGUGUGCGUGUGCGAUAAACAAGCCACAUGUACAGCACACAC
..-.....((........)).......((((((................))))))..((((.((((((((((((.(((.......))).).)))))))))))))))... ( -25.39)
>DroEre_CAF1 261338 108 + 1
AA-AGAAAGCAAAAAGACGCAAUGCAAACACAAAAAACUUUGAGCCACCUUCUGUCAUGUGACUGUAUGUGUGCGUGAGCGAUAAACAAGCCACAUGUACAGCACACAC
..-............(((((...)).....((((....))))...........))).((((.(((((((((((.((..(.......)..)))))))))))))))))... ( -22.80)
>DroYak_CAF1 264519 109 + 1
AAAAGAACGCAAAAAGACGCAAUGCACACACAAAAAACUUUGAGCCACCUUCUGUCAUGUGACUGUAUGUGUGCGUGAGCGAUAAACAAGCCACAUGUACAGCACACAC
...............(((((...)).....((((....))))...........))).((((.(((((((((((.((..(.......)..)))))))))))))))))... ( -22.80)
>consensus
AA_AGAACGCAAAAAGAAGCAAUACAAACACAAAAAACUUUGAGCCACCUUCUGUCAUGUGACUGUAUGUGUGCGUGAGCGAUAAACAAGCCACAUGUACAGCACACAC
....((..((........))..........((((....))))............)).((((.(((((((((((.((.............)))))))))))))))))... (-18.44 = -18.84 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006