Locus 1756

Sequence ID 3L_DroMel_CAF1
Location 5,046,963 – 5,047,074
Length 111
Max. P 0.928702
window2714

overview

Window 4

Location 5,046,963 – 5,047,074
Length 111
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 83.32
Mean single sequence MFE -23.48
Consensus MFE -13.28
Energy contribution -13.36
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -2.91
Structure conservation index 0.57
SVM decision value 1.19
SVM RNA-class probability 0.928702
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5046963 111 + 23771897
CCAAGCACAGCAACAACCAUGUCUAUGAAAUAUCAUGGACAU----AUAAAAAAUGCAGUGCAGCAAACUAAAACA-AAUCUUAAAAAGCGAAAGCAAGUUUUUCGAAAGUUAUCG
....((((.(((......((((((((((....))))))))))----........))).))))..............-..((..((((.((....))...))))..))......... ( -25.14)
>DroSec_CAF1 253473 115 + 1
CCAAGGACAGCAACAACCAUGUCUAUGAAAUAUCAUGGACAUAUGUAUAAAAAAUGCAGUGCAGCAAACUAAAACA-AAUCUUAAAAAGCGAAAGCAAGUUUUUCGAAAGUUACCG
..((((((.(((......((((((((((....)))))))))).(((((.....))))).)))..............-...........((....))..))))))(....)...... ( -25.10)
>DroSim_CAF1 274761 115 + 1
CCAAGGACAGCAACAACCAUGUCUAUGAAAUAUCAUGGACAUAUGUAUAAAAAAUGCAGUGCAGCAAACUAAAACA-AAUCUUAAAAAGCGAAAGCAAGUUUUUCGAAAGUUACCG
..((((((.(((......((((((((((....)))))))))).(((((.....))))).)))..............-...........((....))..))))))(....)...... ( -25.10)
>DroEre_CAF1 260264 101 + 1
CCGAGGACAGCA-CAACUAUGUCUAUGAAAUAUCAUGGAGGU----AUA-AAAAUGCAGGGCGCAGAACUAAAAUAAAAUCUGAAAAGG---------GUUUUUCAAAGGAAACCG
.........(((-....(((.(((((((....))))))).))----)..-....)))......((((............)))).....(---------(((((......)))))). ( -18.40)
>DroYak_CAF1 263422 102 + 1
CCGAGGACAGCAACAACCAUGUCUAUGAAAUAUCAUGGACAU----AUACAAAAUGCAUGGCACCGAACUAAAACA-AAUCUUAAAAGG---------GUUUUUCAAAGGUAGCCG
.........(((......((((((((((....))))))))))----........)))..((((((.....(((((.-............---------))))).....))).))). ( -23.66)
>consensus
CCAAGGACAGCAACAACCAUGUCUAUGAAAUAUCAUGGACAU____AUAAAAAAUGCAGUGCAGCAAACUAAAACA_AAUCUUAAAAAGCGAAAGCAAGUUUUUCGAAAGUUACCG
....(((.(((.......((((((((((....))))))))))............(((...)))...................................))).)))........... (-13.28 = -13.36 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006