Locus 1754

Sequence ID 3L_DroMel_CAF1
Location 5,045,859 – 5,045,975
Length 116
Max. P 0.768256
window2710

overview

Window 0

Location 5,045,859 – 5,045,975
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.93
Mean single sequence MFE -30.95
Consensus MFE -30.61
Energy contribution -30.33
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -0.77
Structure conservation index 0.99
SVM decision value 0.52
SVM RNA-class probability 0.768256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5045859 116 - 23771897
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCGCAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG-CUA---
..........(((((....((((..........(((..(((.((((....))))((((((.....))))))........)))..)))(((...)))..))))....)))))..-...--- ( -32.10)
>DroPse_CAF1 321245 120 - 1
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGUUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCACGAUAAAAUCAUGCCACCC
.......((((((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....))))))))...... ( -32.00)
>DroSec_CAF1 252383 116 - 1
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG-CGA---
..........(((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....)))))..-...--- ( -30.40)
>DroSim_CAF1 273671 116 - 1
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG-CGA---
..........(((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....)))))..-...--- ( -30.40)
>DroEre_CAF1 259172 116 - 1
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG-CGA---
..........(((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....)))))..-...--- ( -30.40)
>DroYak_CAF1 262309 116 - 1
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG-CGA---
..........(((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....)))))..-...--- ( -30.40)
>consensus
UUAUUAUUAUGAUUUGAAAGUGCAUAAACCACUUGAGGGCGAUUCGGAUUCGGAGCAGCGCAUUUCGCUGCAUAAUUGGCACAAUCAGCCAAAGGCGAGCGCGAUAAAAUCCG_CGA___
..........(((((....((((.....((......))((..((((....))))((((((.....))))))....(((((.......)))))..))..))))....)))))......... (-30.61 = -30.33 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:24 2006