| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,044,636 – 5,044,747 |
| Length | 111 |
| Max. P | 0.564912 |
| Location | 5,044,636 – 5,044,747 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.00 |
| Mean single sequence MFE | -18.93 |
| Consensus MFE | -11.45 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5044636 111 + 23771897 AAUUUUAAGGAACUAACUAAUUUCUCGUGAAAUUAAGUGUUAAAUUAGAAUUGCAACAAUUGUACAUUUUGCCAGAGGAAACACGUUCUUAAAGGCGAUUUGAAGAAAAAU ((((((((..(((....(((((((....)))))))...)))...))))))))............((..(((((..(((((.....)))))...)))))..))......... ( -21.30) >DroSec_CAF1 251157 110 + 1 AUUUUUAAGGAAAUAACUAAUUUCACUUGAAAUUAAGUGUUAAAUUAAAAUUGCAACAAAUUUACAGUUUGCCA-AGGAAAUACGCCCUUAAAGGCGUCUUAAAGAAAAAU .((((((((..........(((((.((((.....((.(((.(((((............)))))))).))...))-)))))))(((((......)))))))))))))..... ( -19.90) >DroSim_CAF1 272079 89 + 1 AUUUUUGAGGAAAAAACUAGUUUCUCUUGAAAUGAAGUGUUAAGUUAAACAUGCAACA----------------------AUACGCUCUUAAAGGCGUUUUGAAGAAAAAU .(((..((((((........))))))..))).....(((((......)))))....((----------------------(.(((((......))))).)))......... ( -15.60) >consensus AUUUUUAAGGAAAUAACUAAUUUCUCUUGAAAUUAAGUGUUAAAUUAAAAUUGCAACAA_U_UACA_UUUGCCA_AGGAAAUACGCUCUUAAAGGCGUUUUGAAGAAAAAU .((((((((......(((((((((....)))))).))).............................................((((......)))).))))))))..... (-11.45 = -10.80 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:20 2006