Locus 1751

Sequence ID 3L_DroMel_CAF1
Location 5,044,084 – 5,044,178
Length 94
Max. P 0.784432
window2704

overview

Window 4

Location 5,044,084 – 5,044,178
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 97.45
Mean single sequence MFE -19.20
Consensus MFE -19.26
Energy contribution -18.62
Covariance contribution -0.64
Combinations/Pair 1.16
Mean z-score -1.19
Structure conservation index 1.00
SVM decision value 0.57
SVM RNA-class probability 0.784432
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5044084 94 - 23771897
CUGAUGACCAAGUGGGUCGAGCCAAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGCUUCGAGCCUGGUC
.....(((((.((..(((((.(((((.....))))).)).)))..))................................((.....)).))))) ( -19.10)
>DroSec_CAF1 250604 94 - 1
CUGAUGGCCAAGUGGGUCGAACCAAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGCUUCGAGCCUGGCC
.....(((((...((.((((((((((.....)))))....((......))...............................))))).))))))) ( -19.20)
>DroSim_CAF1 271526 94 - 1
CUGAUGGCCAAGUGGGUCGAACCAAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGCUUCGAGCCUGGCC
.....(((((...((.((((((((((.....)))))....((......))...............................))))).))))))) ( -19.20)
>DroEre_CAF1 254051 94 - 1
CUGAUGGCCAAGUGGGUCGAACCAAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGUAUCGAGCCUGGCC
.....(((((...((.((((.(((((.....)))))....((......))................................)))).))))))) ( -18.80)
>DroYak_CAF1 260481 94 - 1
CUGAUGGCCAAGUGGGUCGAACCGAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGCUUCGAGCCUGGCC
.....(((((.((..(((..(((.(((....))).)))..)))..))................................((.....)).))))) ( -19.70)
>consensus
CUGAUGGCCAAGUGGGUCGAACCAAAAACGCUUUGGGUCAGACAAACAUCAAUAAAUUAGAAAAUGAAUAAAUAAAUAAGCUUCGAGCCUGGCC
.....(((((.((..(((((.(((((.....))))).)).)))..))................................((.....)).))))) (-19.26 = -18.62 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:19 2006